Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00043

Experiment: PYE with Chloramphenicol 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00042 and CCNA_00043 are separated by 78 nucleotidesCCNA_00043 and CCNA_00044 are separated by 2 nucleotidesCCNA_00044 and CCNA_00045 are separated by 258 nucleotides CCNA_00042: CCNA_00042 - RNA-binding protein, YlxR family, at 45,893 to 46,543 _00042 CCNA_00043: CCNA_00043 - N utilization substance protein A NusA, at 46,622 to 48,268 _00043 CCNA_00044: CCNA_00044 - ribosome maturation protein RimP, at 48,271 to 48,846 _00044 CCNA_00045: CCNA_00045 - inorganic pyrophosphatase, at 49,105 to 49,638 _00045 Position (kb) 46 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.628 kb on - strandat 45.720 kb on - strandat 45.859 kb on - strandat 46.488 kb on + strandat 46.518 kb on + strandat 46.556 kb on + strandat 46.556 kb on + strandat 46.564 kb on - strandat 46.608 kb on - strandat 46.618 kb on - strandat 46.618 kb on - strandat 46.620 kb on + strandat 46.627 kb on - strandat 46.627 kb on - strandat 46.627 kb on - strandat 46.627 kb on - strandat 46.627 kb on - strandat 46.627 kb on - strandat 46.628 kb on - strandat 46.655 kb on + strandat 46.655 kb on + strandat 46.716 kb on + strandat 46.716 kb on + strandat 46.876 kb on - strand, within CCNA_00043at 46.903 kb on - strand, within CCNA_00043at 46.908 kb on - strand, within CCNA_00043at 46.908 kb on - strand, within CCNA_00043at 46.916 kb on - strand, within CCNA_00043at 46.921 kb on - strand, within CCNA_00043at 46.921 kb on - strand, within CCNA_00043at 46.937 kb on + strand, within CCNA_00043at 46.955 kb on + strand, within CCNA_00043at 46.962 kb on + strand, within CCNA_00043at 46.963 kb on - strand, within CCNA_00043at 46.963 kb on - strand, within CCNA_00043at 46.970 kb on - strand, within CCNA_00043at 48.277 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.302 kb on - strandat 48.367 kb on - strand, within CCNA_00044at 48.367 kb on - strand, within CCNA_00044at 48.377 kb on - strand, within CCNA_00044at 48.385 kb on - strand, within CCNA_00044at 48.403 kb on - strand, within CCNA_00044at 48.438 kb on - strand, within CCNA_00044at 48.478 kb on - strand, within CCNA_00044at 48.478 kb on - strand, within CCNA_00044at 48.495 kb on - strand, within CCNA_00044at 48.576 kb on - strand, within CCNA_00044at 48.662 kb on - strand, within CCNA_00044at 49.019 kb on - strandat 49.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0001 mg/ml
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45,628 - +2.1
45,720 - +0.3
45,859 - +1.5
46,488 + +0.9
46,518 + -1.9
46,556 + +0.8
46,556 + +0.8
46,564 - +0.9
46,608 - +2.1
46,618 - +0.8
46,618 - +2.1
46,620 + -0.0
46,627 - +1.9
46,627 - +1.7
46,627 - +2.0
46,627 - +1.7
46,627 - +2.2
46,627 - +2.0
46,628 - +2.5
46,655 + -1.2
46,655 + -1.7
46,716 + -1.5
46,716 + -3.2
46,876 - CCNA_00043 0.15 +1.9
46,903 - CCNA_00043 0.17 +0.4
46,908 - CCNA_00043 0.17 +2.1
46,908 - CCNA_00043 0.17 +2.3
46,916 - CCNA_00043 0.18 +1.4
46,921 - CCNA_00043 0.18 +2.1
46,921 - CCNA_00043 0.18 +0.9
46,937 + CCNA_00043 0.19 -0.8
46,955 + CCNA_00043 0.20 -0.3
46,962 + CCNA_00043 0.21 +0.1
46,963 - CCNA_00043 0.21 +1.5
46,963 - CCNA_00043 0.21 +1.9
46,970 - CCNA_00043 0.21 +1.5
48,277 - +1.9
48,302 - +1.6
48,302 - +1.6
48,302 - +1.7
48,302 - +1.6
48,302 - +1.9
48,302 - +2.2
48,302 - +2.3
48,302 - +1.6
48,367 - CCNA_00044 0.17 +1.2
48,367 - CCNA_00044 0.17 -0.2
48,377 - CCNA_00044 0.18 +0.5
48,385 - CCNA_00044 0.20 +2.1
48,403 - CCNA_00044 0.23 +0.7
48,438 - CCNA_00044 0.29 +0.9
48,478 - CCNA_00044 0.36 +1.4
48,478 - CCNA_00044 0.36 +0.5
48,495 - CCNA_00044 0.39 -0.8
48,576 - CCNA_00044 0.53 +1.7
48,662 - CCNA_00044 0.68 +1.6
49,019 - -0.6
49,039 + -0.9

Or see this region's nucleotide sequence