Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30460

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30455 and BPHYT_RS30460 are separated by 18 nucleotidesBPHYT_RS30460 and BPHYT_RS30465 are separated by 58 nucleotides BPHYT_RS30455: BPHYT_RS30455 - transketolase, at 2,391,614 to 2,393,575 _RS30455 BPHYT_RS30460: BPHYT_RS30460 - glycerate dehydrogenase, at 2,393,594 to 2,394,559 _RS30460 BPHYT_RS30465: BPHYT_RS30465 - short-chain dehydrogenase, at 2,394,618 to 2,395,394 _RS30465 Position (kb) 2393 2394 2395Strain fitness (log2 ratio) -1 0 1 2at 2392.794 kb on - strand, within BPHYT_RS30455at 2392.809 kb on + strand, within BPHYT_RS30455at 2393.173 kb on + strand, within BPHYT_RS30455at 2393.208 kb on + strand, within BPHYT_RS30455at 2393.516 kb on + strandat 2393.545 kb on + strandat 2394.232 kb on + strand, within BPHYT_RS30460at 2394.950 kb on - strand, within BPHYT_RS30465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,392,794 - BPHYT_RS30455 0.60 +0.3
2,392,809 + BPHYT_RS30455 0.61 +2.2
2,393,173 + BPHYT_RS30455 0.79 -0.2
2,393,208 + BPHYT_RS30455 0.81 +1.6
2,393,516 + -0.2
2,393,545 + +0.1
2,394,232 + BPHYT_RS30460 0.66 -0.3
2,394,950 - BPHYT_RS30465 0.43 -1.1

Or see this region's nucleotide sequence