Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04125

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04120 and BPHYT_RS04125 are separated by 43 nucleotidesBPHYT_RS04125 and BPHYT_RS04130 are separated by 759 nucleotides BPHYT_RS04120: BPHYT_RS04120 - protein tyrosine kinase, at 940,712 to 943,066 _RS04120 BPHYT_RS04125: BPHYT_RS04125 - hypothetical protein, at 943,110 to 944,270 _RS04125 BPHYT_RS04130: BPHYT_RS04130 - alpha/beta hydrolase, at 945,030 to 946,925 _RS04130 Position (kb) 943 944 945Strain fitness (log2 ratio) -2 -1 0 1 2at 942.318 kb on - strand, within BPHYT_RS04120at 942.417 kb on + strand, within BPHYT_RS04120at 942.463 kb on - strand, within BPHYT_RS04120at 942.786 kb on - strand, within BPHYT_RS04120at 943.002 kb on - strandat 943.002 kb on - strandat 943.034 kb on - strandat 943.386 kb on - strand, within BPHYT_RS04125at 943.450 kb on - strand, within BPHYT_RS04125at 943.622 kb on + strand, within BPHYT_RS04125at 943.622 kb on + strand, within BPHYT_RS04125at 943.671 kb on + strand, within BPHYT_RS04125at 943.791 kb on + strand, within BPHYT_RS04125at 943.792 kb on - strand, within BPHYT_RS04125at 943.795 kb on - strand, within BPHYT_RS04125at 943.966 kb on - strand, within BPHYT_RS04125at 944.206 kb on - strandat 944.344 kb on - strandat 945.018 kb on + strandat 945.024 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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942,318 - BPHYT_RS04120 0.68 +1.5
942,417 + BPHYT_RS04120 0.72 +0.2
942,463 - BPHYT_RS04120 0.74 +0.4
942,786 - BPHYT_RS04120 0.88 +0.8
943,002 - +1.8
943,002 - +1.2
943,034 - +1.7
943,386 - BPHYT_RS04125 0.24 +0.9
943,450 - BPHYT_RS04125 0.29 +1.1
943,622 + BPHYT_RS04125 0.44 +0.5
943,622 + BPHYT_RS04125 0.44 +1.4
943,671 + BPHYT_RS04125 0.48 +1.3
943,791 + BPHYT_RS04125 0.59 +1.9
943,792 - BPHYT_RS04125 0.59 +0.3
943,795 - BPHYT_RS04125 0.59 +1.2
943,966 - BPHYT_RS04125 0.74 +0.6
944,206 - +0.4
944,344 - -0.3
945,018 + -1.3
945,024 + -1.8

Or see this region's nucleotide sequence