Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03590

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS03585 and BPHYT_RS03590 are separated by 483 nucleotidesBPHYT_RS03590 and BPHYT_RS03595 are separated by 279 nucleotides BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356 _RS03585 BPHYT_RS03590: BPHYT_RS03590 - chaperone protein DnaK, at 814,840 to 816,792 _RS03590 BPHYT_RS03595: BPHYT_RS03595 - chaperone protein DnaJ, at 817,072 to 818,211 _RS03595 Position (kb) 814 815 816 817Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 814.354 kb on + strandat 814.355 kb on - strandat 814.493 kb on - strandat 814.505 kb on - strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.508 kb on + strandat 814.509 kb on - strandat 814.510 kb on + strandat 814.511 kb on - strandat 814.617 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 814.741 kb on + strandat 816.928 kb on + strandat 816.928 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
814,354 + +3.4
814,355 - +0.7
814,493 - +0.2
814,505 - +0.8
814,508 + +0.6
814,508 + -3.8
814,508 + -0.4
814,508 + +0.4
814,509 - -0.2
814,510 + +0.1
814,511 - -1.4
814,617 + -1.7
814,741 + +1.9
814,741 + -0.6
814,741 + +0.9
814,741 + +0.2
814,741 + -0.1
816,928 + -0.1
816,928 + -1.8

Or see this region's nucleotide sequence