Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01465

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01460 and BPHYT_RS01465 are separated by 114 nucleotidesBPHYT_RS01465 and BPHYT_RS01470 are separated by 103 nucleotides BPHYT_RS01460: BPHYT_RS01460 - methionyl-tRNA formyltransferase, at 333,741 to 334,727 _RS01460 BPHYT_RS01465: BPHYT_RS01465 - lysine transporter LysE, at 334,842 to 335,486 _RS01465 BPHYT_RS01470: BPHYT_RS01470 - protease HtpX homolog, at 335,590 to 336,447 _RS01470 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1 2at 334.725 kb on + strandat 334.725 kb on + strandat 334.726 kb on - strandat 334.802 kb on + strandat 334.813 kb on - strandat 334.920 kb on + strand, within BPHYT_RS01465at 334.920 kb on + strand, within BPHYT_RS01465at 334.920 kb on + strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.921 kb on - strand, within BPHYT_RS01465at 334.922 kb on + strand, within BPHYT_RS01465at 334.922 kb on + strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 334.923 kb on - strand, within BPHYT_RS01465at 335.060 kb on + strand, within BPHYT_RS01465at 335.060 kb on + strand, within BPHYT_RS01465at 335.084 kb on + strand, within BPHYT_RS01465at 335.085 kb on - strand, within BPHYT_RS01465at 335.089 kb on - strand, within BPHYT_RS01465at 335.089 kb on - strand, within BPHYT_RS01465at 335.089 kb on - strand, within BPHYT_RS01465at 335.098 kb on - strand, within BPHYT_RS01465at 335.098 kb on - strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.236 kb on + strand, within BPHYT_RS01465at 335.237 kb on - strand, within BPHYT_RS01465at 335.237 kb on - strand, within BPHYT_RS01465at 335.237 kb on - strand, within BPHYT_RS01465at 335.513 kb on + strandat 335.514 kb on - strandat 335.520 kb on + strandat 335.520 kb on + strandat 335.520 kb on + strandat 335.525 kb on + strandat 335.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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334,725 + +0.0
334,725 + +0.1
334,726 - -0.9
334,802 + -0.5
334,813 - +1.5
334,920 + BPHYT_RS01465 0.12 -0.3
334,920 + BPHYT_RS01465 0.12 +0.2
334,920 + BPHYT_RS01465 0.12 +0.0
334,921 - BPHYT_RS01465 0.12 -0.5
334,921 - BPHYT_RS01465 0.12 +0.3
334,921 - BPHYT_RS01465 0.12 -2.3
334,921 - BPHYT_RS01465 0.12 +0.4
334,921 - BPHYT_RS01465 0.12 -1.6
334,921 - BPHYT_RS01465 0.12 -0.9
334,922 + BPHYT_RS01465 0.12 -0.6
334,922 + BPHYT_RS01465 0.12 +0.5
334,923 - BPHYT_RS01465 0.13 -0.4
334,923 - BPHYT_RS01465 0.13 +0.4
334,923 - BPHYT_RS01465 0.13 +1.0
334,923 - BPHYT_RS01465 0.13 -0.1
334,923 - BPHYT_RS01465 0.13 -0.5
334,923 - BPHYT_RS01465 0.13 -1.0
335,060 + BPHYT_RS01465 0.34 -0.5
335,060 + BPHYT_RS01465 0.34 -0.1
335,084 + BPHYT_RS01465 0.38 +2.4
335,085 - BPHYT_RS01465 0.38 -0.3
335,089 - BPHYT_RS01465 0.38 +0.4
335,089 - BPHYT_RS01465 0.38 +0.4
335,089 - BPHYT_RS01465 0.38 +0.0
335,098 - BPHYT_RS01465 0.40 -0.9
335,098 - BPHYT_RS01465 0.40 +1.8
335,236 + BPHYT_RS01465 0.61 -0.4
335,236 + BPHYT_RS01465 0.61 +1.0
335,236 + BPHYT_RS01465 0.61 -1.0
335,236 + BPHYT_RS01465 0.61 +0.1
335,236 + BPHYT_RS01465 0.61 -0.2
335,236 + BPHYT_RS01465 0.61 +0.2
335,236 + BPHYT_RS01465 0.61 +0.2
335,236 + BPHYT_RS01465 0.61 +0.0
335,237 - BPHYT_RS01465 0.61 -0.7
335,237 - BPHYT_RS01465 0.61 +0.1
335,237 - BPHYT_RS01465 0.61 +0.5
335,513 + -1.3
335,514 - +1.5
335,520 + +0.8
335,520 + -0.6
335,520 + +0.3
335,525 + +0.3
335,526 - -1.9

Or see this region's nucleotide sequence