Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS17820

Experiment: Recovery broth with Pyrimethamine 4e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Pyrimethamine 4e-04 mM
1,777,169	-				-0.4
1,777,206	+		BBR_RS17815	0.12	+0.4
1,777,211	+		BBR_RS17815	0.13	+0.5
1,777,232	+		BBR_RS17815	0.15	+0.5
1,777,258	-		BBR_RS17815	0.17	-0.8
1,777,258	-		BBR_RS17815	0.17	+0.8
1,777,275	+		BBR_RS17815	0.19	+0.5
1,777,296	+		BBR_RS17815	0.21	+0.7
1,777,296	+		BBR_RS17815	0.21	-0.4
1,777,304	-		BBR_RS17815	0.22	+0.0
1,777,311	+		BBR_RS17815	0.23	-1.0
1,777,373	+		BBR_RS17815	0.29	-0.1
1,777,380	+		BBR_RS17815	0.30	+0.3
1,777,435	+		BBR_RS17815	0.35	-0.1
1,777,455	+		BBR_RS17815	0.38	-1.2
1,777,502	-		BBR_RS17815	0.42	+0.5
1,777,502	-		BBR_RS17815	0.42	-0.9
1,777,516	-		BBR_RS17815	0.44	+0.3
1,777,534	-		BBR_RS17815	0.46	+0.0
1,777,550	-		BBR_RS17815	0.47	-0.0
1,777,629	-		BBR_RS17815	0.55	+0.4
1,777,633	+		BBR_RS17815	0.56	+0.8
1,777,633	+		BBR_RS17815	0.56	-0.9
1,777,633	+		BBR_RS17815	0.56	+1.4
1,777,633	+		BBR_RS17815	0.56	-0.2
1,777,641	-		BBR_RS17815	0.56	+0.5
1,777,733	-		BBR_RS17815	0.66	+0.4
1,777,733	-		BBR_RS17815	0.66	-0.5
1,777,733	-		BBR_RS17815	0.66	-0.7
1,777,767	-		BBR_RS17815	0.69	+0.2
1,777,767	-		BBR_RS17815	0.69	+1.2
1,777,792	-		BBR_RS17815	0.72	-0.4
1,777,793	+		BBR_RS17815	0.72	+1.4
1,777,801	-		BBR_RS17815	0.73	+0.6
1,777,801	-		BBR_RS17815	0.73	-0.5
1,777,801	-		BBR_RS17815	0.73	-0.6
1,777,803	+		BBR_RS17815	0.73	-0.4
1,777,803	+		BBR_RS17815	0.73	+0.6
1,777,803	+		BBR_RS17815	0.73	+0.5
1,777,803	+		BBR_RS17815	0.73	+0.0
1,777,803	+		BBR_RS17815	0.73	+0.8
1,777,803	+		BBR_RS17815	0.73	+0.3
1,777,803	+		BBR_RS17815	0.73	-0.3
1,777,806	-		BBR_RS17815	0.73	-0.9
1,777,811	-		BBR_RS17815	0.74	-0.0
1,777,811	-		BBR_RS17815	0.74	-0.6
1,777,811	-		BBR_RS17815	0.74	-0.3
1,777,811	-		BBR_RS17815	0.74	-0.7
1,777,811	-		BBR_RS17815	0.74	+0.2
1,777,811	-		BBR_RS17815	0.74	+0.9
1,777,811	-		BBR_RS17815	0.74	-0.7
1,777,811	-		BBR_RS17815	0.74	+0.6
1,777,827	-		BBR_RS17815	0.75	-1.6
1,777,832	-		BBR_RS17815	0.76	+0.2
1,777,837	-		BBR_RS17815	0.76	+0.9
1,777,839	+		BBR_RS17815	0.77	-0.2
1,777,839	+		BBR_RS17815	0.77	+0.5
1,777,842	-		BBR_RS17815	0.77	+0.1
1,777,871	-		BBR_RS17815	0.80	+0.6
1,777,905	-		BBR_RS17815	0.83	-0.6
1,777,943	+		BBR_RS17815	0.87	+0.6
1,777,982	+				+0.4
1,777,989	+				+0.3
1,777,989	+				-0.1
1,777,989	+				-0.3
1,777,991	+				+1.2
1,778,011	-				-0.4
1,778,040	+				+1.0
1,778,044	+				-0.2
1,778,089	-				-0.5
1,778,115	+				-1.7
1,778,216	+				-0.5
1,778,224	-		BBR_RS17820	0.10	-0.2
1,778,257	-		BBR_RS17820	0.14	+0.4
1,778,290	-		BBR_RS17820	0.17	-0.9
1,778,298	+		BBR_RS17820	0.18	+0.2
1,778,302	+		BBR_RS17820	0.18	+1.5
1,778,316	-		BBR_RS17820	0.20	-0.6
1,778,355	+		BBR_RS17820	0.24	+0.3
1,778,355	+		BBR_RS17820	0.24	-0.3
1,778,363	-		BBR_RS17820	0.25	-0.8
1,778,381	-		BBR_RS17820	0.27	-0.8
1,778,383	+		BBR_RS17820	0.27	+0.1
1,778,480	-		BBR_RS17820	0.37	+0.3
1,778,546	+		BBR_RS17820	0.44	+1.2
1,778,563	-		BBR_RS17820	0.46	+1.6
1,778,568	+		BBR_RS17820	0.46	-1.2
1,778,621	+		BBR_RS17820	0.52	-0.1
1,778,638	+		BBR_RS17820	0.54	-0.5
1,778,646	-		BBR_RS17820	0.54	-1.5
1,778,649	-		BBR_RS17820	0.55	-1.2
1,778,649	-		BBR_RS17820	0.55	-0.8
1,778,658	+		BBR_RS17820	0.56	-1.0
1,778,660	+		BBR_RS17820	0.56	+0.1
1,778,660	+		BBR_RS17820	0.56	-1.0
1,778,660	+		BBR_RS17820	0.56	-0.0
1,778,666	-		BBR_RS17820	0.57	-0.0
1,778,666	-		BBR_RS17820	0.57	+0.8
1,778,739	-		BBR_RS17820	0.64	+0.1
1,778,746	+		BBR_RS17820	0.65	+0.2
1,778,761	-		BBR_RS17820	0.66	-0.6
1,778,798	-		BBR_RS17820	0.70	-0.3
1,778,801	+		BBR_RS17820	0.71	-0.0
1,778,811	+		BBR_RS17820	0.72	+0.1
1,778,838	+		BBR_RS17820	0.75	-0.0
1,778,838	+		BBR_RS17820	0.75	+0.0
1,778,902	-		BBR_RS17820	0.81	-0.3
1,778,910	-		BBR_RS17820	0.82	+0.3
1,778,929	-		BBR_RS17820	0.84	-0.2
1,778,946	-		BBR_RS17820	0.86	+0.9
1,779,032	+				-1.1
1,779,071	+				+1.7
1,779,079	-				-0.1
1,779,079	-				+0.1
1,779,110	-				-0.1
1,779,170	+		BBR_RS17825	0.14	+0.5
1,779,183	+		BBR_RS17825	0.16	+1.2
1,779,183	+		BBR_RS17825	0.16	-0.2
1,779,206	-		BBR_RS17825	0.19	-0.1
1,779,217	+		BBR_RS17825	0.20	-0.5
1,779,217	+		BBR_RS17825	0.20	-0.0
1,779,225	-		BBR_RS17825	0.22	+0.4
1,779,225	-		BBR_RS17825	0.22	+0.6
1,779,225	-		BBR_RS17825	0.22	-0.2
1,779,234	-		BBR_RS17825	0.23	-0.5
1,779,273	-		BBR_RS17825	0.28	+0.4
1,779,300	-		BBR_RS17825	0.32	+0.4
1,779,320	-		BBR_RS17825	0.35	+0.4
1,779,320	-		BBR_RS17825	0.35	-0.2
1,779,320	-		BBR_RS17825	0.35	-0.1
1,779,336	+		BBR_RS17825	0.37	+0.7
1,779,342	+		BBR_RS17825	0.38	-0.4
1,779,379	+		BBR_RS17825	0.43	-0.2
1,779,389	+		BBR_RS17825	0.45	-0.0
1,779,389	+		BBR_RS17825	0.45	-0.9
1,779,397	-		BBR_RS17825	0.46	-0.3
1,779,397	-		BBR_RS17825	0.46	-0.6
1,779,398	-		BBR_RS17825	0.46	-0.4
1,779,420	-		BBR_RS17825	0.49	+0.6
1,779,427	+		BBR_RS17825	0.50	+1.5
1,779,435	-		BBR_RS17825	0.51	+0.6
1,779,445	-		BBR_RS17825	0.53	-1.2
1,779,454	+		BBR_RS17825	0.54	+0.3
1,779,462	-		BBR_RS17825	0.55	+0.2
1,779,462	-		BBR_RS17825	0.55	-1.7
1,779,462	-		BBR_RS17825	0.55	+0.4
1,779,475	-		BBR_RS17825	0.57	+0.8
1,779,520	+		BBR_RS17825	0.64	-1.8
1,779,521	+		BBR_RS17825	0.64	-0.6
1,779,521	+		BBR_RS17825	0.64	-0.4
1,779,526	+		BBR_RS17825	0.64	-0.1
1,779,526	+		BBR_RS17825	0.64	-2.3
1,779,537	-		BBR_RS17825	0.66	-0.2
1,779,583	+		BBR_RS17825	0.73	+0.6
1,779,583	+		BBR_RS17825	0.73	+1.0
1,779,584	+		BBR_RS17825	0.73	+0.2
1,779,584	+		BBR_RS17825	0.73	-0.7
1,779,589	+		BBR_RS17825	0.73	+0.1
1,779,589	+		BBR_RS17825	0.73	-0.6
1,779,592	-		BBR_RS17825	0.74	+0.2
1,779,592	-		BBR_RS17825	0.74	-0.1
1,779,592	-		BBR_RS17825	0.74	-0.0
1,779,592	-		BBR_RS17825	0.74	+0.4
1,779,592	-		BBR_RS17825	0.74	-0.0
1,779,597	-		BBR_RS17825	0.75	-0.9
1,779,603	+		BBR_RS17825	0.75	-0.3
1,779,626	-		BBR_RS17825	0.79	-0.3
1,779,760	-				+0.0
1,779,760	-				-0.1
1,779,766	+				+0.4
1,779,833	+				+1.1
1,779,839	+				+0.4
1,779,839	+				+0.3
1,779,839	+				-0.7
1,779,841	-				+0.4
1,779,841	-				+0.5
1,779,846	+				+0.4
1,779,847	+				+0.9
1,779,847	+				-0.9
1,779,847	-				+0.4
1,779,847	-				-1.0
1,779,896	-		BBR_RS17830	0.16	-0.2
1,779,896	-		BBR_RS17830	0.16	+0.4
1,779,906	-		BBR_RS17830	0.17	-0.5
1,779,917	-		BBR_RS17830	0.18	-0.1
1,779,932	-		BBR_RS17830	0.20	-0.6
1,779,941	+		BBR_RS17830	0.21	+0.5
1,779,949	-		BBR_RS17830	0.22	-0.3
1,779,968	+		BBR_RS17830	0.25	+0.1
1,779,973	-		BBR_RS17830	0.25	+1.6
1,779,976	-		BBR_RS17830	0.25	-0.5
1,779,976	-		BBR_RS17830	0.25	-0.8
1,779,986	-		BBR_RS17830	0.27	-0.3
1,780,026	+		BBR_RS17830	0.32	+0.3
1,780,074	-		BBR_RS17830	0.38	-1.2
1,780,079	+		BBR_RS17830	0.38	-0.6