Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_843

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_842 and Ac3H11_843 are separated by 163 nucleotidesAc3H11_843 and Ac3H11_844 are separated by 55 nucleotides Ac3H11_842 - Predicted transcriptional regulator, at 123,337 to 124,068 _842 Ac3H11_843 - FIG01198984: hypothetical protein, at 124,232 to 125,074 _843 Ac3H11_844 - Lysophospholipid transporter LplT / 2-acylglycerophosphoethanolamine acyltransferase (EC 2.3.1.40) / Acyl-[acyl-carrier-protein] synthetase (EC 6.2.1.20), at 125,130 to 127,088 _844 Position (kb) 124 125 126Strain fitness (log2 ratio) -2 -1 0 1 2at 123.323 kb on - strandat 123.323 kb on - strandat 123.398 kb on + strandat 123.398 kb on + strandat 123.566 kb on + strand, within Ac3H11_842at 123.567 kb on - strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.593 kb on + strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.594 kb on - strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.704 kb on + strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.705 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 123.735 kb on - strand, within Ac3H11_842at 124.004 kb on + strandat 124.004 kb on + strandat 124.004 kb on + strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.005 kb on - strandat 124.114 kb on - strandat 124.114 kb on - strandat 124.118 kb on - strandat 124.118 kb on - strandat 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.404 kb on + strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.405 kb on - strand, within Ac3H11_843at 124.548 kb on - strand, within Ac3H11_843at 124.677 kb on + strand, within Ac3H11_843at 124.677 kb on + strand, within Ac3H11_843at 124.677 kb on + strand, within Ac3H11_843at 124.677 kb on + strand, within Ac3H11_843at 124.678 kb on - strand, within Ac3H11_843at 124.678 kb on - strand, within Ac3H11_843at 124.678 kb on - strand, within Ac3H11_843at 124.678 kb on - strand, within Ac3H11_843at 124.818 kb on + strand, within Ac3H11_843at 124.818 kb on + strand, within Ac3H11_843at 124.819 kb on - strand, within Ac3H11_843at 124.844 kb on + strand, within Ac3H11_843at 124.844 kb on + strand, within Ac3H11_843at 124.845 kb on - strand, within Ac3H11_843at 124.845 kb on - strand, within Ac3H11_843at 124.845 kb on - strand, within Ac3H11_843at 124.894 kb on + strand, within Ac3H11_843at 124.895 kb on - strand, within Ac3H11_843at 124.895 kb on - strand, within Ac3H11_843at 124.895 kb on - strand, within Ac3H11_843at 124.895 kb on - strand, within Ac3H11_843at 124.898 kb on + strand, within Ac3H11_843at 124.898 kb on + strand, within Ac3H11_843at 124.899 kb on - strand, within Ac3H11_843at 124.899 kb on - strand, within Ac3H11_843at 124.899 kb on - strand, within Ac3H11_843at 124.899 kb on - strand, within Ac3H11_843at 125.316 kb on + strandat 125.316 kb on + strandat 125.316 kb on + strandat 125.430 kb on + strand, within Ac3H11_844at 125.430 kb on + strand, within Ac3H11_844at 125.431 kb on - strand, within Ac3H11_844at 125.431 kb on - strand, within Ac3H11_844at 125.589 kb on + strand, within Ac3H11_844at 125.589 kb on + strand, within Ac3H11_844at 125.589 kb on + strand, within Ac3H11_844at 125.589 kb on + strand, within Ac3H11_844at 125.589 kb on + strand, within Ac3H11_844at 125.590 kb on - strand, within Ac3H11_844at 125.590 kb on - strand, within Ac3H11_844at 125.590 kb on - strand, within Ac3H11_844at 125.590 kb on - strand, within Ac3H11_844at 125.698 kb on + strand, within Ac3H11_844

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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123,323 - -0.4
123,323 - +0.2
123,398 + -0.1
123,398 + -0.6
123,566 + Ac3H11_842 0.31 +0.0
123,567 - Ac3H11_842 0.31 -0.6
123,593 + Ac3H11_842 0.35 -0.9
123,593 + Ac3H11_842 0.35 -0.9
123,593 + Ac3H11_842 0.35 -1.1
123,594 - Ac3H11_842 0.35 -0.7
123,594 - Ac3H11_842 0.35 +0.4
123,594 - Ac3H11_842 0.35 -0.7
123,594 - Ac3H11_842 0.35 +0.6
123,594 - Ac3H11_842 0.35 +0.4
123,704 + Ac3H11_842 0.50 -0.4
123,704 + Ac3H11_842 0.50 -0.3
123,704 + Ac3H11_842 0.50 -0.6
123,705 - Ac3H11_842 0.50 +0.4
123,705 - Ac3H11_842 0.50 +0.5
123,735 - Ac3H11_842 0.54 +0.1
123,735 - Ac3H11_842 0.54 +2.6
123,735 - Ac3H11_842 0.54 +0.1
124,004 + -0.2
124,004 + +0.3
124,004 + +0.5
124,005 - -0.2
124,005 - -0.3
124,005 - -0.4
124,005 - -0.9
124,114 - +0.1
124,114 - -0.1
124,118 - +1.2
124,118 - -0.3
124,404 + Ac3H11_843 0.20 -0.1
124,404 + Ac3H11_843 0.20 +0.5
124,404 + Ac3H11_843 0.20 +0.6
124,404 + Ac3H11_843 0.20 +0.6
124,404 + Ac3H11_843 0.20 -0.0
124,404 + Ac3H11_843 0.20 -0.6
124,404 + Ac3H11_843 0.20 +0.8
124,405 - Ac3H11_843 0.21 +0.7
124,405 - Ac3H11_843 0.21 -0.1
124,405 - Ac3H11_843 0.21 -0.0
124,405 - Ac3H11_843 0.21 +1.1
124,405 - Ac3H11_843 0.21 +0.1
124,405 - Ac3H11_843 0.21 +0.8
124,548 - Ac3H11_843 0.37 -0.2
124,677 + Ac3H11_843 0.53 -0.2
124,677 + Ac3H11_843 0.53 +0.7
124,677 + Ac3H11_843 0.53 -0.4
124,677 + Ac3H11_843 0.53 +0.9
124,678 - Ac3H11_843 0.53 +0.7
124,678 - Ac3H11_843 0.53 +0.4
124,678 - Ac3H11_843 0.53 -0.8
124,678 - Ac3H11_843 0.53 +0.6
124,818 + Ac3H11_843 0.70 -1.3
124,818 + Ac3H11_843 0.70 -0.2
124,819 - Ac3H11_843 0.70 -0.1
124,844 + Ac3H11_843 0.73 -0.4
124,844 + Ac3H11_843 0.73 +0.1
124,845 - Ac3H11_843 0.73 +0.6
124,845 - Ac3H11_843 0.73 -0.1
124,845 - Ac3H11_843 0.73 +0.8
124,894 + Ac3H11_843 0.79 +0.8
124,895 - Ac3H11_843 0.79 -0.3
124,895 - Ac3H11_843 0.79 +0.0
124,895 - Ac3H11_843 0.79 -0.7
124,895 - Ac3H11_843 0.79 +0.6
124,898 + Ac3H11_843 0.79 -1.0
124,898 + Ac3H11_843 0.79 -0.4
124,899 - Ac3H11_843 0.79 -0.3
124,899 - Ac3H11_843 0.79 -0.4
124,899 - Ac3H11_843 0.79 +0.6
124,899 - Ac3H11_843 0.79 +1.0
125,316 + -0.5
125,316 + -0.9
125,316 + -0.1
125,430 + Ac3H11_844 0.15 -0.6
125,430 + Ac3H11_844 0.15 -0.0
125,431 - Ac3H11_844 0.15 +0.2
125,431 - Ac3H11_844 0.15 +0.4
125,589 + Ac3H11_844 0.23 -0.4
125,589 + Ac3H11_844 0.23 -1.1
125,589 + Ac3H11_844 0.23 +1.2
125,589 + Ac3H11_844 0.23 -2.7
125,589 + Ac3H11_844 0.23 -0.7
125,590 - Ac3H11_844 0.23 -0.3
125,590 - Ac3H11_844 0.23 -0.6
125,590 - Ac3H11_844 0.23 -0.3
125,590 - Ac3H11_844 0.23 -0.8
125,698 + Ac3H11_844 0.29 +0.2

Or see this region's nucleotide sequence