Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3100 and Ac3H11_3101 are separated by 138 nucleotides Ac3H11_3101 and Ac3H11_3102 are separated by 42 nucleotides Ac3H11_3102 and Ac3H11_3103 are separated by 439 nucleotides Ac3H11_3103 and Ac3H11_3104 are separated by 36 nucleotides
Ac3H11_3100 - Transcriptional regulator, AsnC family, at 181 to 618
_3100
Ac3H11_3101 - protein of unknown function DUF1234, at 757 to 1,314
_3101
Ac3H11_3102 - Lipoprotein, putative, at 1,357 to 1,980
_3102
Ac3H11_3103 - putative nuclease, at 2,420 to 2,857
_3103
Ac3H11_3104 - putative flagellin, at 2,894 to 4,597
_3104
Position (kb)
1
2 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 0.378 kb on - strand, within Ac3H11_3100 at 0.378 kb on - strand, within Ac3H11_3100 at 0.709 kb on + strand at 0.793 kb on + strand at 0.793 kb on + strand at 0.794 kb on - strand at 0.794 kb on - strand at 0.794 kb on - strand at 1.166 kb on - strand, within Ac3H11_3101 at 1.327 kb on + strand at 1.368 kb on + strand at 1.394 kb on + strand at 1.425 kb on - strand, within Ac3H11_3102 at 1.425 kb on - strand, within Ac3H11_3102 at 1.556 kb on + strand, within Ac3H11_3102 at 1.556 kb on + strand, within Ac3H11_3102 at 1.556 kb on + strand, within Ac3H11_3102 at 1.557 kb on - strand, within Ac3H11_3102 at 1.557 kb on - strand, within Ac3H11_3102 at 1.557 kb on - strand, within Ac3H11_3102 at 1.557 kb on - strand, within Ac3H11_3102 at 1.715 kb on + strand, within Ac3H11_3102 at 1.716 kb on - strand, within Ac3H11_3102 at 1.716 kb on - strand, within Ac3H11_3102 at 1.716 kb on - strand, within Ac3H11_3102 at 2.136 kb on + strand at 2.136 kb on + strand at 2.136 kb on + strand at 2.137 kb on - strand at 2.137 kb on - strand at 2.137 kb on - strand at 2.139 kb on - strand at 2.167 kb on + strand at 2.225 kb on + strand at 2.299 kb on + strand at 2.353 kb on - strand at 2.642 kb on + strand, within Ac3H11_3103 at 2.643 kb on - strand, within Ac3H11_3103 at 2.643 kb on - strand, within Ac3H11_3103 at 2.643 kb on - strand, within Ac3H11_3103 at 2.643 kb on - strand, within Ac3H11_3103 at 2.664 kb on + strand, within Ac3H11_3103 at 2.664 kb on + strand, within Ac3H11_3103 at 2.664 kb on + strand, within Ac3H11_3103 at 2.664 kb on + strand, within Ac3H11_3103 at 2.665 kb on - strand, within Ac3H11_3103 at 2.665 kb on - strand, within Ac3H11_3103 at 2.665 kb on - strand, within Ac3H11_3103 at 2.723 kb on + strand, within Ac3H11_3103 at 2.723 kb on + strand, within Ac3H11_3103 at 2.723 kb on + strand, within Ac3H11_3103 at 2.723 kb on + strand, within Ac3H11_3103 at 2.724 kb on - strand, within Ac3H11_3103
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 378 - Ac3H11_3100 0.45 +0.3 378 - Ac3H11_3100 0.45 -0.6 709 + +0.2 793 + -1.6 793 + +0.8 794 - +0.0 794 - -0.2 794 - +1.8 1,166 - Ac3H11_3101 0.73 -1.8 1,327 + -0.7 1,368 + -0.8 1,394 + -1.1 1,425 - Ac3H11_3102 0.11 -0.6 1,425 - Ac3H11_3102 0.11 +0.2 1,556 + Ac3H11_3102 0.32 -0.1 1,556 + Ac3H11_3102 0.32 -0.1 1,556 + Ac3H11_3102 0.32 -2.9 1,557 - Ac3H11_3102 0.32 -0.2 1,557 - Ac3H11_3102 0.32 -0.8 1,557 - Ac3H11_3102 0.32 +0.7 1,557 - Ac3H11_3102 0.32 +0.4 1,715 + Ac3H11_3102 0.57 +0.2 1,716 - Ac3H11_3102 0.58 +0.9 1,716 - Ac3H11_3102 0.58 +0.2 1,716 - Ac3H11_3102 0.58 +0.7 2,136 + +0.1 2,136 + -2.1 2,136 + +0.9 2,137 - -0.5 2,137 - -0.3 2,137 - -0.6 2,139 - -0.5 2,167 + -0.8 2,225 + -0.5 2,299 + +0.1 2,353 - -1.1 2,642 + Ac3H11_3103 0.51 -0.8 2,643 - Ac3H11_3103 0.51 -0.5 2,643 - Ac3H11_3103 0.51 +0.4 2,643 - Ac3H11_3103 0.51 +0.3 2,643 - Ac3H11_3103 0.51 +0.3 2,664 + Ac3H11_3103 0.56 -0.2 2,664 + Ac3H11_3103 0.56 +0.1 2,664 + Ac3H11_3103 0.56 +0.8 2,664 + Ac3H11_3103 0.56 -1.6 2,665 - Ac3H11_3103 0.56 +0.7 2,665 - Ac3H11_3103 0.56 +0.9 2,665 - Ac3H11_3103 0.56 +0.2 2,723 + Ac3H11_3103 0.69 +0.9 2,723 + Ac3H11_3103 0.69 +0.2 2,723 + Ac3H11_3103 0.69 -1.0 2,723 + Ac3H11_3103 0.69 -0.2 2,724 - Ac3H11_3103 0.69 +0.2
Or see this region's nucleotide sequence