Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16680

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16675 and AZOBR_RS16680 are separated by 156 nucleotidesAZOBR_RS16680 and AZOBR_RS16685 overlap by 4 nucleotides AZOBR_RS16675: AZOBR_RS16675 - CobW, at 497,944 to 499,011 _RS16675 AZOBR_RS16680: AZOBR_RS16680 - cobaltochelatase, at 499,168 to 502,581 _RS16680 AZOBR_RS16685: AZOBR_RS16685 - precorrin-3B synthase, at 502,578 to 503,984 _RS16685 Position (kb) 499 500 501 502 503Strain fitness (log2 ratio) -1 0 1at 499.026 kb on - strandat 499.153 kb on + strandat 499.154 kb on - strandat 499.175 kb on + strandat 499.175 kb on + strandat 499.176 kb on - strandat 499.176 kb on - strandat 499.393 kb on + strandat 499.393 kb on + strandat 499.457 kb on - strandat 499.649 kb on - strand, within AZOBR_RS16680at 500.698 kb on + strand, within AZOBR_RS16680at 500.701 kb on + strand, within AZOBR_RS16680at 500.701 kb on + strand, within AZOBR_RS16680at 500.854 kb on + strand, within AZOBR_RS16680at 500.855 kb on - strand, within AZOBR_RS16680at 502.135 kb on + strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.136 kb on - strand, within AZOBR_RS16680at 502.189 kb on + strand, within AZOBR_RS16680at 502.408 kb on + strandat 502.418 kb on - strandat 502.646 kb on + strandat 502.944 kb on + strand, within AZOBR_RS16685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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499,026 - +0.6
499,153 + +1.1
499,154 - +0.1
499,175 + +0.1
499,175 + +0.7
499,176 - +0.6
499,176 - +0.5
499,393 + -0.7
499,393 + -0.1
499,457 - +0.1
499,649 - AZOBR_RS16680 0.14 +1.0
500,698 + AZOBR_RS16680 0.45 -0.3
500,701 + AZOBR_RS16680 0.45 +0.5
500,701 + AZOBR_RS16680 0.45 -0.1
500,854 + AZOBR_RS16680 0.49 +1.1
500,855 - AZOBR_RS16680 0.49 +0.4
502,135 + AZOBR_RS16680 0.87 +0.3
502,136 - AZOBR_RS16680 0.87 +0.1
502,136 - AZOBR_RS16680 0.87 +0.4
502,136 - AZOBR_RS16680 0.87 +0.0
502,136 - AZOBR_RS16680 0.87 -1.7
502,189 + AZOBR_RS16680 0.88 -0.6
502,408 + +0.6
502,418 - -0.9
502,646 + -0.1
502,944 + AZOBR_RS16685 0.26 -0.0

Or see this region's nucleotide sequence