Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14240

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14235 and AZOBR_RS14240 are separated by 88 nucleotidesAZOBR_RS14240 and AZOBR_RS14245 are separated by 233 nucleotides AZOBR_RS14235: AZOBR_RS14235 - chemotaxis protein CheA, at 2,994,826 to 2,996,478 _RS14235 AZOBR_RS14240: AZOBR_RS14240 - chemotaxis protein CheW, at 2,996,567 to 2,997,124 _RS14240 AZOBR_RS14245: AZOBR_RS14245 - chemotaxis protein, at 2,997,358 to 2,999,877 _RS14245 Position (kb) 2996 2997 2998Strain fitness (log2 ratio) -1 0 1 2at 2996.234 kb on - strand, within AZOBR_RS14235at 2996.234 kb on - strand, within AZOBR_RS14235at 2996.234 kb on - strand, within AZOBR_RS14235at 2996.657 kb on + strand, within AZOBR_RS14240at 2996.658 kb on - strand, within AZOBR_RS14240at 2996.658 kb on - strand, within AZOBR_RS14240at 2996.658 kb on - strand, within AZOBR_RS14240at 2996.688 kb on - strand, within AZOBR_RS14240at 2996.763 kb on - strand, within AZOBR_RS14240at 2996.994 kb on - strand, within AZOBR_RS14240at 2997.008 kb on + strand, within AZOBR_RS14240at 2997.009 kb on - strand, within AZOBR_RS14240at 2997.009 kb on - strand, within AZOBR_RS14240at 2997.009 kb on - strand, within AZOBR_RS14240at 2997.009 kb on - strand, within AZOBR_RS14240at 2997.225 kb on - strandat 2997.331 kb on + strandat 2997.587 kb on - strandat 2997.587 kb on - strandat 2997.733 kb on + strand, within AZOBR_RS14245at 2997.733 kb on + strand, within AZOBR_RS14245at 2997.734 kb on - strand, within AZOBR_RS14245at 2997.734 kb on - strand, within AZOBR_RS14245

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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2,996,234 - AZOBR_RS14235 0.85 +0.1
2,996,234 - AZOBR_RS14235 0.85 +0.0
2,996,234 - AZOBR_RS14235 0.85 +0.2
2,996,657 + AZOBR_RS14240 0.16 +1.4
2,996,658 - AZOBR_RS14240 0.16 +0.5
2,996,658 - AZOBR_RS14240 0.16 +0.1
2,996,658 - AZOBR_RS14240 0.16 +0.4
2,996,688 - AZOBR_RS14240 0.22 -0.9
2,996,763 - AZOBR_RS14240 0.35 -0.3
2,996,994 - AZOBR_RS14240 0.77 +1.8
2,997,008 + AZOBR_RS14240 0.79 +0.7
2,997,009 - AZOBR_RS14240 0.79 +1.0
2,997,009 - AZOBR_RS14240 0.79 +0.7
2,997,009 - AZOBR_RS14240 0.79 +0.9
2,997,009 - AZOBR_RS14240 0.79 +0.3
2,997,225 - +0.3
2,997,331 + +0.1
2,997,587 - +0.3
2,997,587 - +1.7
2,997,733 + AZOBR_RS14245 0.15 -0.4
2,997,733 + AZOBR_RS14245 0.15 -0.2
2,997,734 - AZOBR_RS14245 0.15 +0.1
2,997,734 - AZOBR_RS14245 0.15 +0.2

Or see this region's nucleotide sequence