Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS13210

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS13205 and AZOBR_RS13210 are separated by 37 nucleotidesAZOBR_RS13210 and AZOBR_RS13215 are separated by 15 nucleotides AZOBR_RS13205: AZOBR_RS13205 - hypothetical protein, at 2,789,786 to 2,791,750 _RS13205 AZOBR_RS13210: AZOBR_RS13210 - hypothetical protein, at 2,791,788 to 2,793,032 _RS13210 AZOBR_RS13215: AZOBR_RS13215 - putative peptidase (S8 and S53 subtilisin kexin sedolisin family) (fragment), at 2,793,048 to 2,794,703 _RS13215 Position (kb) 2791 2792 2793 2794Strain fitness (log2 ratio) -2 -1 0 1at 2790.898 kb on - strand, within AZOBR_RS13205at 2790.898 kb on - strand, within AZOBR_RS13205at 2791.070 kb on + strand, within AZOBR_RS13205at 2791.070 kb on + strand, within AZOBR_RS13205at 2791.070 kb on + strand, within AZOBR_RS13205at 2791.071 kb on - strand, within AZOBR_RS13205at 2791.071 kb on - strand, within AZOBR_RS13205at 2791.142 kb on + strand, within AZOBR_RS13205at 2791.247 kb on + strand, within AZOBR_RS13205at 2791.247 kb on + strand, within AZOBR_RS13205at 2791.248 kb on - strand, within AZOBR_RS13205at 2791.248 kb on - strand, within AZOBR_RS13205at 2791.248 kb on - strand, within AZOBR_RS13205at 2791.248 kb on - strand, within AZOBR_RS13205at 2791.248 kb on - strand, within AZOBR_RS13205at 2791.254 kb on + strand, within AZOBR_RS13205at 2791.254 kb on + strand, within AZOBR_RS13205at 2791.255 kb on - strand, within AZOBR_RS13205at 2791.255 kb on - strand, within AZOBR_RS13205at 2791.255 kb on - strand, within AZOBR_RS13205at 2791.255 kb on - strand, within AZOBR_RS13205at 2791.255 kb on - strand, within AZOBR_RS13205at 2791.846 kb on + strandat 2791.846 kb on + strandat 2791.847 kb on - strandat 2791.847 kb on - strandat 2791.847 kb on - strandat 2791.847 kb on - strandat 2792.063 kb on - strand, within AZOBR_RS13210at 2792.383 kb on + strand, within AZOBR_RS13210at 2792.383 kb on + strand, within AZOBR_RS13210at 2792.383 kb on + strand, within AZOBR_RS13210at 2792.384 kb on - strand, within AZOBR_RS13210at 2792.384 kb on - strand, within AZOBR_RS13210at 2792.522 kb on - strand, within AZOBR_RS13210at 2792.587 kb on + strand, within AZOBR_RS13210at 2792.587 kb on + strand, within AZOBR_RS13210at 2792.587 kb on + strand, within AZOBR_RS13210at 2792.936 kb on + strandat 2792.936 kb on + strandat 2792.937 kb on - strandat 2793.217 kb on + strand, within AZOBR_RS13215at 2793.217 kb on + strand, within AZOBR_RS13215at 2793.217 kb on + strand, within AZOBR_RS13215at 2793.218 kb on - strand, within AZOBR_RS13215at 2793.218 kb on - strand, within AZOBR_RS13215at 2793.544 kb on + strand, within AZOBR_RS13215at 2793.544 kb on + strand, within AZOBR_RS13215at 2793.544 kb on + strand, within AZOBR_RS13215at 2793.544 kb on + strand, within AZOBR_RS13215at 2793.545 kb on - strand, within AZOBR_RS13215at 2793.545 kb on - strand, within AZOBR_RS13215at 2793.616 kb on + strand, within AZOBR_RS13215at 2793.652 kb on + strand, within AZOBR_RS13215at 2793.652 kb on + strand, within AZOBR_RS13215at 2793.652 kb on + strand, within AZOBR_RS13215at 2793.653 kb on - strand, within AZOBR_RS13215at 2793.653 kb on - strand, within AZOBR_RS13215at 2793.653 kb on - strand, within AZOBR_RS13215at 2793.653 kb on - strand, within AZOBR_RS13215at 2793.722 kb on - strand, within AZOBR_RS13215at 2793.735 kb on + strand, within AZOBR_RS13215at 2793.735 kb on + strand, within AZOBR_RS13215at 2793.736 kb on - strand, within AZOBR_RS13215at 2793.937 kb on - strand, within AZOBR_RS13215at 2793.950 kb on - strand, within AZOBR_RS13215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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2,790,898 - AZOBR_RS13205 0.57 +0.1
2,790,898 - AZOBR_RS13205 0.57 +1.1
2,791,070 + AZOBR_RS13205 0.65 -0.3
2,791,070 + AZOBR_RS13205 0.65 -0.9
2,791,070 + AZOBR_RS13205 0.65 +0.3
2,791,071 - AZOBR_RS13205 0.65 +0.4
2,791,071 - AZOBR_RS13205 0.65 -0.3
2,791,142 + AZOBR_RS13205 0.69 +0.2
2,791,247 + AZOBR_RS13205 0.74 -1.8
2,791,247 + AZOBR_RS13205 0.74 +1.2
2,791,248 - AZOBR_RS13205 0.74 +0.4
2,791,248 - AZOBR_RS13205 0.74 -0.3
2,791,248 - AZOBR_RS13205 0.74 -0.2
2,791,248 - AZOBR_RS13205 0.74 +0.3
2,791,248 - AZOBR_RS13205 0.74 -0.2
2,791,254 + AZOBR_RS13205 0.75 +0.6
2,791,254 + AZOBR_RS13205 0.75 -0.0
2,791,255 - AZOBR_RS13205 0.75 -0.8
2,791,255 - AZOBR_RS13205 0.75 +1.4
2,791,255 - AZOBR_RS13205 0.75 +0.1
2,791,255 - AZOBR_RS13205 0.75 +0.3
2,791,255 - AZOBR_RS13205 0.75 -0.5
2,791,846 + -1.0
2,791,846 + +1.5
2,791,847 - +0.8
2,791,847 - -0.1
2,791,847 - +0.5
2,791,847 - -0.9
2,792,063 - AZOBR_RS13210 0.22 +0.3
2,792,383 + AZOBR_RS13210 0.48 -0.0
2,792,383 + AZOBR_RS13210 0.48 -0.0
2,792,383 + AZOBR_RS13210 0.48 +1.5
2,792,384 - AZOBR_RS13210 0.48 +0.9
2,792,384 - AZOBR_RS13210 0.48 -0.2
2,792,522 - AZOBR_RS13210 0.59 -0.0
2,792,587 + AZOBR_RS13210 0.64 +0.3
2,792,587 + AZOBR_RS13210 0.64 +0.4
2,792,587 + AZOBR_RS13210 0.64 -0.5
2,792,936 + -0.3
2,792,936 + +0.4
2,792,937 - +1.7
2,793,217 + AZOBR_RS13215 0.10 -0.7
2,793,217 + AZOBR_RS13215 0.10 +1.0
2,793,217 + AZOBR_RS13215 0.10 -0.1
2,793,218 - AZOBR_RS13215 0.10 -0.5
2,793,218 - AZOBR_RS13215 0.10 +0.3
2,793,544 + AZOBR_RS13215 0.30 +0.3
2,793,544 + AZOBR_RS13215 0.30 -0.3
2,793,544 + AZOBR_RS13215 0.30 +0.5
2,793,544 + AZOBR_RS13215 0.30 +0.1
2,793,545 - AZOBR_RS13215 0.30 +0.4
2,793,545 - AZOBR_RS13215 0.30 -0.4
2,793,616 + AZOBR_RS13215 0.34 +0.2
2,793,652 + AZOBR_RS13215 0.36 +0.2
2,793,652 + AZOBR_RS13215 0.36 -0.2
2,793,652 + AZOBR_RS13215 0.36 -0.1
2,793,653 - AZOBR_RS13215 0.37 +1.0
2,793,653 - AZOBR_RS13215 0.37 -0.2
2,793,653 - AZOBR_RS13215 0.37 +0.6
2,793,653 - AZOBR_RS13215 0.37 -0.6
2,793,722 - AZOBR_RS13215 0.41 +0.5
2,793,735 + AZOBR_RS13215 0.41 +0.7
2,793,735 + AZOBR_RS13215 0.41 +0.6
2,793,736 - AZOBR_RS13215 0.42 +0.6
2,793,937 - AZOBR_RS13215 0.54 -1.4
2,793,950 - AZOBR_RS13215 0.54 +0.5

Or see this region's nucleotide sequence