Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06540 and AZOBR_RS06545 are separated by 357 nucleotides AZOBR_RS06545 and AZOBR_RS06550 are separated by 122 nucleotides AZOBR_RS06550 and AZOBR_RS06555 are separated by 18 nucleotides
AZOBR_RS06540: AZOBR_RS06540 - phosphoserine phosphatase, at 1,384,945 to 1,385,856
_RS06540
AZOBR_RS06545: AZOBR_RS06545 - hypothetical protein, at 1,386,214 to 1,386,510
_RS06545
AZOBR_RS06550: AZOBR_RS06550 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 1,386,633 to 1,387,595
_RS06550
AZOBR_RS06555: AZOBR_RS06555 - Branched-chain-amino-acid transaminase (EC 2.6.1.42) (from data) , at 1,387,614 to 1,388,828
_RS06555
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-1
0
1 at 1385.950 kb on - strand at 1386.045 kb on + strand at 1386.130 kb on + strand at 1386.130 kb on + strand at 1386.442 kb on + strand, within AZOBR_RS06545 at 1386.442 kb on + strand, within AZOBR_RS06545 at 1386.443 kb on - strand, within AZOBR_RS06545 at 1386.443 kb on - strand, within AZOBR_RS06545 at 1386.568 kb on + strand at 1386.568 kb on + strand at 1387.520 kb on + strand at 1387.521 kb on - strand at 1387.776 kb on + strand, within AZOBR_RS06555 at 1387.825 kb on - strand, within AZOBR_RS06555 at 1387.825 kb on - strand, within AZOBR_RS06555 at 1387.825 kb on - strand, within AZOBR_RS06555 at 1387.873 kb on - strand, within AZOBR_RS06555 at 1388.005 kb on - strand, within AZOBR_RS06555 at 1388.047 kb on - strand, within AZOBR_RS06555 at 1388.047 kb on - strand, within AZOBR_RS06555 at 1388.047 kb on - strand, within AZOBR_RS06555 at 1388.128 kb on - strand, within AZOBR_RS06555 at 1388.128 kb on - strand, within AZOBR_RS06555 at 1388.241 kb on + strand, within AZOBR_RS06555 at 1388.257 kb on - strand, within AZOBR_RS06555
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 1,385,950 - -0.5 1,386,045 + +0.3 1,386,130 + -0.7 1,386,130 + +0.0 1,386,442 + AZOBR_RS06545 0.77 +0.1 1,386,442 + AZOBR_RS06545 0.77 -0.4 1,386,443 - AZOBR_RS06545 0.77 +0.1 1,386,443 - AZOBR_RS06545 0.77 -0.5 1,386,568 + -0.3 1,386,568 + +0.7 1,387,520 + +0.2 1,387,521 - +0.8 1,387,776 + AZOBR_RS06555 0.13 -0.5 1,387,825 - AZOBR_RS06555 0.17 -0.1 1,387,825 - AZOBR_RS06555 0.17 -0.4 1,387,825 - AZOBR_RS06555 0.17 +0.1 1,387,873 - AZOBR_RS06555 0.21 +0.2 1,388,005 - AZOBR_RS06555 0.32 -0.5 1,388,047 - AZOBR_RS06555 0.36 -0.1 1,388,047 - AZOBR_RS06555 0.36 +0.1 1,388,047 - AZOBR_RS06555 0.36 -0.2 1,388,128 - AZOBR_RS06555 0.42 -0.7 1,388,128 - AZOBR_RS06555 0.42 -0.4 1,388,241 + AZOBR_RS06555 0.52 -1.4 1,388,257 - AZOBR_RS06555 0.53 -0.9
Or see this region's nucleotide sequence