Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05085

Experiment: L-Aspartic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05080 and AZOBR_RS05085 are separated by 268 nucleotidesAZOBR_RS05085 and AZOBR_RS05090 are separated by 182 nucleotidesAZOBR_RS05090 and AZOBR_RS05095 are separated by 364 nucleotides AZOBR_RS05080: AZOBR_RS05080 - orotate phosphoribosyltransferase, at 1,078,852 to 1,079,544 _RS05080 AZOBR_RS05085: AZOBR_RS05085 - riboflavin kinase, at 1,079,813 to 1,080,769 _RS05085 AZOBR_RS05090: AZOBR_RS05090 - MaoC family dehydratase, at 1,080,952 to 1,081,401 _RS05090 AZOBR_RS05095: AZOBR_RS05095 - hypothetical protein, at 1,081,766 to 1,082,359 _RS05095 Position (kb) 1079 1080 1081Strain fitness (log2 ratio) -2 -1 0 1 2at 1078.946 kb on + strandat 1079.231 kb on + strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.232 kb on - strand, within AZOBR_RS05080at 1079.550 kb on - strandat 1080.856 kb on - strandat 1080.856 kb on - strandat 1080.858 kb on - strandat 1080.858 kb on - strandat 1080.860 kb on - strandat 1080.860 kb on - strandat 1080.882 kb on + strandat 1080.882 kb on + strandat 1080.883 kb on - strandat 1080.883 kb on - strandat 1080.916 kb on + strandat 1081.133 kb on + strand, within AZOBR_RS05090at 1081.133 kb on + strand, within AZOBR_RS05090at 1081.133 kb on + strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.134 kb on - strand, within AZOBR_RS05090at 1081.450 kb on + strandat 1081.451 kb on - strandat 1081.465 kb on + strandat 1081.465 kb on + strandat 1081.635 kb on + strandat 1081.635 kb on + strandat 1081.635 kb on + strandat 1081.636 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (N)
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1,078,946 + -0.4
1,079,231 + AZOBR_RS05080 0.55 +0.2
1,079,232 - AZOBR_RS05080 0.55 -2.1
1,079,232 - AZOBR_RS05080 0.55 -2.7
1,079,550 - -0.4
1,080,856 - +0.5
1,080,856 - -0.2
1,080,858 - +0.6
1,080,858 - -0.4
1,080,860 - +0.0
1,080,860 - -0.8
1,080,882 + -1.6
1,080,882 + -0.3
1,080,883 - +1.1
1,080,883 - +0.4
1,080,916 + +0.6
1,081,133 + AZOBR_RS05090 0.40 -0.5
1,081,133 + AZOBR_RS05090 0.40 +0.5
1,081,133 + AZOBR_RS05090 0.40 -0.1
1,081,134 - AZOBR_RS05090 0.40 -0.1
1,081,134 - AZOBR_RS05090 0.40 -0.2
1,081,134 - AZOBR_RS05090 0.40 +0.6
1,081,134 - AZOBR_RS05090 0.40 +2.5
1,081,134 - AZOBR_RS05090 0.40 -1.0
1,081,134 - AZOBR_RS05090 0.40 -0.0
1,081,450 + -0.2
1,081,451 - -0.5
1,081,465 + +0.9
1,081,465 + +1.1
1,081,635 + +0.2
1,081,635 + -0.0
1,081,635 + -0.3
1,081,636 - +0.0

Or see this region's nucleotide sequence