Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS20360

Experiment: Fusidic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS20350 and ABZR86_RS20355 are separated by 13 nucleotidesABZR86_RS20355 and ABZR86_RS20360 are separated by 121 nucleotidesABZR86_RS20360 and ABZR86_RS20365 overlap by 4 nucleotidesABZR86_RS20365 and ABZR86_RS20370 are separated by 88 nucleotides ABZR86_RS20350: ABZR86_RS20350 - paraquat-inducible protein A, at 8,022 to 8,621 _RS20350 ABZR86_RS20355: ABZR86_RS20355 - DUF3313 domain-containing protein, at 8,635 to 9,300 _RS20355 ABZR86_RS20360: ABZR86_RS20360 - ATP-binding protein, at 9,422 to 10,579 _RS20360 ABZR86_RS20365: ABZR86_RS20365 - response regulator transcription factor, at 10,576 to 11,238 _RS20365 ABZR86_RS20370: ABZR86_RS20370 - alpha/beta hydrolase, at 11,327 to 12,127 _RS20370 Position (kb) 9 10 11Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 8.468 kb on + strand, within ABZR86_RS20350at 8.468 kb on + strand, within ABZR86_RS20350at 8.736 kb on - strand, within ABZR86_RS20355at 8.750 kb on + strand, within ABZR86_RS20355at 8.751 kb on - strand, within ABZR86_RS20355at 8.784 kb on - strand, within ABZR86_RS20355at 8.784 kb on - strand, within ABZR86_RS20355at 8.855 kb on + strand, within ABZR86_RS20355at 8.856 kb on - strand, within ABZR86_RS20355at 9.078 kb on - strand, within ABZR86_RS20355at 9.078 kb on - strand, within ABZR86_RS20355at 9.138 kb on - strand, within ABZR86_RS20355at 9.185 kb on + strand, within ABZR86_RS20355at 9.186 kb on - strand, within ABZR86_RS20355at 9.210 kb on - strand, within ABZR86_RS20355at 9.294 kb on + strandat 9.349 kb on + strandat 9.375 kb on - strandat 9.574 kb on - strand, within ABZR86_RS20360at 9.743 kb on + strand, within ABZR86_RS20360at 9.744 kb on - strand, within ABZR86_RS20360at 10.599 kb on - strandat 10.599 kb on - strandat 10.674 kb on + strand, within ABZR86_RS20365at 10.675 kb on - strand, within ABZR86_RS20365at 10.675 kb on - strand, within ABZR86_RS20365at 10.703 kb on + strand, within ABZR86_RS20365at 10.703 kb on + strand, within ABZR86_RS20365at 10.703 kb on + strand, within ABZR86_RS20365at 10.703 kb on + strand, within ABZR86_RS20365at 10.704 kb on - strand, within ABZR86_RS20365at 10.707 kb on + strand, within ABZR86_RS20365at 10.707 kb on + strand, within ABZR86_RS20365at 10.708 kb on - strand, within ABZR86_RS20365at 10.708 kb on - strand, within ABZR86_RS20365at 10.708 kb on - strand, within ABZR86_RS20365at 11.031 kb on - strand, within ABZR86_RS20365at 11.104 kb on - strand, within ABZR86_RS20365at 11.106 kb on - strand, within ABZR86_RS20365at 11.106 kb on - strand, within ABZR86_RS20365at 11.234 kb on + strandat 11.234 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
remove
8,468 + ABZR86_RS20350 0.74 +0.5
8,468 + ABZR86_RS20350 0.74 +0.7
8,736 - ABZR86_RS20355 0.15 +1.3
8,750 + ABZR86_RS20355 0.17 -0.4
8,751 - ABZR86_RS20355 0.17 -1.9
8,784 - ABZR86_RS20355 0.22 +0.2
8,784 - ABZR86_RS20355 0.22 -0.5
8,855 + ABZR86_RS20355 0.33 -0.8
8,856 - ABZR86_RS20355 0.33 -0.2
9,078 - ABZR86_RS20355 0.67 -0.0
9,078 - ABZR86_RS20355 0.67 +0.0
9,138 - ABZR86_RS20355 0.76 +0.3
9,185 + ABZR86_RS20355 0.83 +1.0
9,186 - ABZR86_RS20355 0.83 -0.5
9,210 - ABZR86_RS20355 0.86 +0.4
9,294 + +0.3
9,349 + +0.2
9,375 - -0.2
9,574 - ABZR86_RS20360 0.13 +0.2
9,743 + ABZR86_RS20360 0.28 +0.5
9,744 - ABZR86_RS20360 0.28 -1.4
10,599 - -0.3
10,599 - -0.6
10,674 + ABZR86_RS20365 0.15 +0.8
10,675 - ABZR86_RS20365 0.15 -0.8
10,675 - ABZR86_RS20365 0.15 +0.4
10,703 + ABZR86_RS20365 0.19 -1.1
10,703 + ABZR86_RS20365 0.19 -0.6
10,703 + ABZR86_RS20365 0.19 -0.1
10,703 + ABZR86_RS20365 0.19 -0.2
10,704 - ABZR86_RS20365 0.19 +0.5
10,707 + ABZR86_RS20365 0.20 +1.3
10,707 + ABZR86_RS20365 0.20 -0.4
10,708 - ABZR86_RS20365 0.20 +0.2
10,708 - ABZR86_RS20365 0.20 -0.5
10,708 - ABZR86_RS20365 0.20 +0.5
11,031 - ABZR86_RS20365 0.69 -0.3
11,104 - ABZR86_RS20365 0.80 +5.4
11,106 - ABZR86_RS20365 0.80 +0.9
11,106 - ABZR86_RS20365 0.80 +0.3
11,234 + +0.0
11,234 + +0.2

Or see this region's nucleotide sequence