Experiment: Fusidic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS11940 and ABZR86_RS11945 are separated by 80 nucleotides ABZR86_RS11945 and ABZR86_RS11950 are separated by 127 nucleotides ABZR86_RS11950 and ABZR86_RS11955 overlap by 4 nucleotides
ABZR86_RS11940: ABZR86_RS11940 - Xaa-Pro dipeptidase, at 2,677,031 to 2,678,353
_RS11940
ABZR86_RS11945: ABZR86_RS11945 - hypothetical protein, at 2,678,434 to 2,678,823
_RS11945
ABZR86_RS11950: ABZR86_RS11950 - cytochrome oxidase putative small subunit CydP, at 2,678,951 to 2,679,187
_RS11950
ABZR86_RS11955: ABZR86_RS11955 - cytochrome ubiquinol oxidase subunit I, at 2,679,184 to 2,680,761
_RS11955
Position (kb)
2678
2679
2680 Strain fitness (log2 ratio)
-1
0
1 at 2678.121 kb on - strand, within ABZR86_RS11940 at 2678.121 kb on - strand, within ABZR86_RS11940 at 2678.180 kb on + strand, within ABZR86_RS11940 at 2678.180 kb on + strand, within ABZR86_RS11940 at 2678.181 kb on - strand, within ABZR86_RS11940 at 2678.917 kb on - strand at 2678.917 kb on - strand at 2678.917 kb on - strand at 2679.244 kb on + strand at 2679.244 kb on + strand at 2679.244 kb on + strand at 2679.440 kb on - strand, within ABZR86_RS11955 at 2679.440 kb on - strand, within ABZR86_RS11955 at 2679.442 kb on + strand, within ABZR86_RS11955 at 2679.442 kb on + strand, within ABZR86_RS11955 at 2679.443 kb on - strand, within ABZR86_RS11955 at 2679.443 kb on - strand, within ABZR86_RS11955 at 2679.451 kb on + strand, within ABZR86_RS11955 at 2679.452 kb on - strand, within ABZR86_RS11955 at 2679.452 kb on - strand, within ABZR86_RS11955 at 2679.766 kb on + strand, within ABZR86_RS11955 at 2679.766 kb on + strand, within ABZR86_RS11955 at 2679.808 kb on + strand, within ABZR86_RS11955 at 2679.809 kb on - strand, within ABZR86_RS11955 at 2680.042 kb on + strand, within ABZR86_RS11955 at 2680.043 kb on - strand, within ABZR86_RS11955 at 2680.043 kb on - strand, within ABZR86_RS11955 at 2680.116 kb on + strand, within ABZR86_RS11955 at 2680.116 kb on + strand, within ABZR86_RS11955
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml remove 2,678,121 - ABZR86_RS11940 0.82 -0.6 2,678,121 - ABZR86_RS11940 0.82 -0.8 2,678,180 + ABZR86_RS11940 0.87 +0.1 2,678,180 + ABZR86_RS11940 0.87 +0.6 2,678,181 - ABZR86_RS11940 0.87 -0.4 2,678,917 - +0.9 2,678,917 - +1.4 2,678,917 - +0.3 2,679,244 + -0.9 2,679,244 + -0.6 2,679,244 + -1.3 2,679,440 - ABZR86_RS11955 0.16 +0.6 2,679,440 - ABZR86_RS11955 0.16 +0.3 2,679,442 + ABZR86_RS11955 0.16 -0.5 2,679,442 + ABZR86_RS11955 0.16 +1.3 2,679,443 - ABZR86_RS11955 0.16 -0.0 2,679,443 - ABZR86_RS11955 0.16 +0.4 2,679,451 + ABZR86_RS11955 0.17 -0.7 2,679,452 - ABZR86_RS11955 0.17 +0.2 2,679,452 - ABZR86_RS11955 0.17 -0.3 2,679,766 + ABZR86_RS11955 0.37 -0.4 2,679,766 + ABZR86_RS11955 0.37 +0.0 2,679,808 + ABZR86_RS11955 0.40 +0.3 2,679,809 - ABZR86_RS11955 0.40 +0.3 2,680,042 + ABZR86_RS11955 0.54 -0.1 2,680,043 - ABZR86_RS11955 0.54 -0.2 2,680,043 - ABZR86_RS11955 0.54 -0.2 2,680,116 + ABZR86_RS11955 0.59 +0.8 2,680,116 + ABZR86_RS11955 0.59 +0.1
Or see this region's nucleotide sequence