Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS10895

Experiment: Fusidic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS10890 and ABZR86_RS10895 overlap by 4 nucleotidesABZR86_RS10895 and ABZR86_RS10900 overlap by 13 nucleotides ABZR86_RS10890: ABZR86_RS10890 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 2,415,979 to 2,417,034 _RS10890 ABZR86_RS10895: ABZR86_RS10895 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 2,417,031 to 2,417,552 _RS10895 ABZR86_RS10900: ABZR86_RS10900 - cobyric acid synthase, at 2,417,540 to 2,419,015 _RS10900 Position (kb) 2417 2418Strain fitness (log2 ratio) -1 0 1 2at 2416.278 kb on + strand, within ABZR86_RS10890at 2416.280 kb on + strand, within ABZR86_RS10890at 2416.280 kb on + strand, within ABZR86_RS10890at 2416.280 kb on + strand, within ABZR86_RS10890at 2416.280 kb on + strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.281 kb on - strand, within ABZR86_RS10890at 2416.488 kb on + strand, within ABZR86_RS10890at 2416.730 kb on - strand, within ABZR86_RS10890at 2417.009 kb on - strandat 2417.009 kb on - strandat 2417.186 kb on + strand, within ABZR86_RS10895at 2417.187 kb on - strand, within ABZR86_RS10895at 2417.464 kb on + strand, within ABZR86_RS10895at 2417.464 kb on + strand, within ABZR86_RS10895at 2417.464 kb on + strand, within ABZR86_RS10895at 2417.464 kb on + strand, within ABZR86_RS10895at 2417.465 kb on - strand, within ABZR86_RS10895at 2417.465 kb on - strand, within ABZR86_RS10895at 2417.736 kb on + strand, within ABZR86_RS10900at 2417.737 kb on - strand, within ABZR86_RS10900at 2417.737 kb on - strand, within ABZR86_RS10900at 2417.747 kb on + strand, within ABZR86_RS10900at 2417.748 kb on - strand, within ABZR86_RS10900at 2418.337 kb on - strand, within ABZR86_RS10900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
remove
2,416,278 + ABZR86_RS10890 0.28 -1.4
2,416,280 + ABZR86_RS10890 0.29 -1.4
2,416,280 + ABZR86_RS10890 0.29 +0.4
2,416,280 + ABZR86_RS10890 0.29 -0.3
2,416,280 + ABZR86_RS10890 0.29 -0.1
2,416,281 - ABZR86_RS10890 0.29 -0.3
2,416,281 - ABZR86_RS10890 0.29 -0.4
2,416,281 - ABZR86_RS10890 0.29 +0.3
2,416,281 - ABZR86_RS10890 0.29 +0.5
2,416,281 - ABZR86_RS10890 0.29 -0.7
2,416,281 - ABZR86_RS10890 0.29 +0.4
2,416,281 - ABZR86_RS10890 0.29 -0.0
2,416,281 - ABZR86_RS10890 0.29 -0.3
2,416,281 - ABZR86_RS10890 0.29 +0.4
2,416,281 - ABZR86_RS10890 0.29 +0.8
2,416,281 - ABZR86_RS10890 0.29 -0.1
2,416,281 - ABZR86_RS10890 0.29 +0.2
2,416,488 + ABZR86_RS10890 0.48 -0.0
2,416,730 - ABZR86_RS10890 0.71 -0.6
2,417,009 - -0.1
2,417,009 - +0.6
2,417,186 + ABZR86_RS10895 0.30 -1.5
2,417,187 - ABZR86_RS10895 0.30 +2.1
2,417,464 + ABZR86_RS10895 0.83 +0.5
2,417,464 + ABZR86_RS10895 0.83 -0.6
2,417,464 + ABZR86_RS10895 0.83 -0.1
2,417,464 + ABZR86_RS10895 0.83 +0.4
2,417,465 - ABZR86_RS10895 0.83 +1.3
2,417,465 - ABZR86_RS10895 0.83 -0.2
2,417,736 + ABZR86_RS10900 0.13 +1.3
2,417,737 - ABZR86_RS10900 0.13 -0.1
2,417,737 - ABZR86_RS10900 0.13 +0.1
2,417,747 + ABZR86_RS10900 0.14 -0.8
2,417,748 - ABZR86_RS10900 0.14 -0.4
2,418,337 - ABZR86_RS10900 0.54 +0.2

Or see this region's nucleotide sequence