Experiment: Fusidic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09075 and ABZR86_RS09080 are separated by 5 nucleotides ABZR86_RS09080 and ABZR86_RS09085 are separated by 139 nucleotides
ABZR86_RS09075: ABZR86_RS09075 - NrsF family protein, at 2,017,827 to 2,018,480
_RS09075
ABZR86_RS09080: ABZR86_RS09080 - sigma-70 family RNA polymerase sigma factor, at 2,018,486 to 2,019,142
_RS09080
ABZR86_RS09085: ABZR86_RS09085 - cytochrome c biogenesis protein DipZ, at 2,019,282 to 2,021,003
_RS09085
Position (kb)
2018
2019
2020 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2017.542 kb on + strand at 2017.543 kb on - strand at 2017.543 kb on - strand at 2017.543 kb on - strand at 2017.597 kb on + strand at 2017.597 kb on + strand at 2018.336 kb on - strand, within ABZR86_RS09075 at 2018.503 kb on + strand at 2018.829 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.847 kb on + strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.848 kb on - strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.851 kb on + strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.852 kb on - strand, within ABZR86_RS09080 at 2018.977 kb on - strand, within ABZR86_RS09080 at 2019.096 kb on - strand at 2019.096 kb on - strand at 2019.104 kb on + strand at 2019.225 kb on + strand at 2019.225 kb on + strand at 2019.225 kb on + strand at 2019.226 kb on - strand at 2019.226 kb on - strand at 2019.250 kb on + strand at 2019.251 kb on - strand at 2019.289 kb on + strand at 2019.290 kb on - strand at 2019.303 kb on + strand at 2019.303 kb on + strand at 2019.304 kb on - strand at 2019.304 kb on - strand at 2019.304 kb on - strand at 2019.490 kb on - strand, within ABZR86_RS09085 at 2019.490 kb on - strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.765 kb on + strand, within ABZR86_RS09085 at 2019.766 kb on - strand, within ABZR86_RS09085
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml remove 2,017,542 + -0.2 2,017,543 - +0.2 2,017,543 - -0.4 2,017,543 - -1.0 2,017,597 + +0.5 2,017,597 + -1.1 2,018,336 - ABZR86_RS09075 0.78 -1.8 2,018,503 + +1.0 2,018,829 + ABZR86_RS09080 0.52 +0.5 2,018,847 + ABZR86_RS09080 0.55 +0.8 2,018,847 + ABZR86_RS09080 0.55 +1.3 2,018,847 + ABZR86_RS09080 0.55 +3.6 2,018,847 + ABZR86_RS09080 0.55 +0.9 2,018,847 + ABZR86_RS09080 0.55 +0.3 2,018,847 + ABZR86_RS09080 0.55 -1.6 2,018,848 - ABZR86_RS09080 0.55 -0.6 2,018,848 - ABZR86_RS09080 0.55 -0.9 2,018,848 - ABZR86_RS09080 0.55 +0.2 2,018,848 - ABZR86_RS09080 0.55 +0.0 2,018,851 + ABZR86_RS09080 0.56 -1.2 2,018,851 + ABZR86_RS09080 0.56 -0.1 2,018,851 + ABZR86_RS09080 0.56 +0.5 2,018,851 + ABZR86_RS09080 0.56 +0.2 2,018,851 + ABZR86_RS09080 0.56 -0.1 2,018,851 + ABZR86_RS09080 0.56 +0.2 2,018,851 + ABZR86_RS09080 0.56 +0.3 2,018,852 - ABZR86_RS09080 0.56 +0.2 2,018,852 - ABZR86_RS09080 0.56 -0.1 2,018,852 - ABZR86_RS09080 0.56 +0.5 2,018,852 - ABZR86_RS09080 0.56 -0.7 2,018,852 - ABZR86_RS09080 0.56 +0.3 2,018,977 - ABZR86_RS09080 0.75 +0.7 2,019,096 - +1.0 2,019,096 - +0.1 2,019,104 + +0.0 2,019,225 + +0.1 2,019,225 + +1.0 2,019,225 + -0.1 2,019,226 - +0.1 2,019,226 - +0.0 2,019,250 + +0.0 2,019,251 - -0.3 2,019,289 + -0.6 2,019,290 - +0.4 2,019,303 + -1.0 2,019,303 + -0.3 2,019,304 - -3.0 2,019,304 - +0.4 2,019,304 - -0.0 2,019,490 - ABZR86_RS09085 0.12 +0.7 2,019,490 - ABZR86_RS09085 0.12 +0.6 2,019,765 + ABZR86_RS09085 0.28 -0.8 2,019,765 + ABZR86_RS09085 0.28 -0.8 2,019,765 + ABZR86_RS09085 0.28 -0.3 2,019,766 - ABZR86_RS09085 0.28 +0.2
Or see this region's nucleotide sequence