Experiment: Fusidic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS08140 and ABZR86_RS08145 are separated by 138 nucleotides ABZR86_RS08145 and ABZR86_RS08150 are separated by 96 nucleotides ABZR86_RS08150 and ABZR86_RS08155 overlap by 4 nucleotides ABZR86_RS08155 and ABZR86_RS08160 overlap by 4 nucleotides
ABZR86_RS08140: ABZR86_RS08140 - iron-sulfur cluster carrier protein ApbC, at 1,815,175 to 1,816,269
_RS08140
ABZR86_RS08145: ABZR86_RS08145 - DUF2147 domain-containing protein, at 1,816,408 to 1,816,848
_RS08145
ABZR86_RS08150: ABZR86_RS08150 - DeoR/GlpR family DNA-binding transcription regulator, at 1,816,945 to 1,817,757
_RS08150
ABZR86_RS08155: ABZR86_RS08155 - HAD family hydrolase, at 1,817,754 to 1,818,392
_RS08155
ABZR86_RS08160: ABZR86_RS08160 - MFS transporter, at 1,818,389 to 1,819,507
_RS08160
Position (kb) 1816
1817
1818 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1816.304 kb on - strand at 1816.304 kb on - strand at 1816.304 kb on - strand at 1816.383 kb on + strand at 1816.383 kb on + strand at 1816.384 kb on - strand at 1816.384 kb on - strand at 1816.384 kb on - strand at 1816.384 kb on - strand at 1816.461 kb on + strand, within ABZR86_RS08145 at 1816.741 kb on + strand, within ABZR86_RS08145 at 1816.742 kb on - strand, within ABZR86_RS08145 at 1816.742 kb on - strand, within ABZR86_RS08145 at 1816.742 kb on - strand, within ABZR86_RS08145 at 1816.795 kb on + strand, within ABZR86_RS08145 at 1816.796 kb on - strand, within ABZR86_RS08145 at 1816.847 kb on - strand at 1816.856 kb on + strand at 1816.856 kb on + strand at 1816.857 kb on - strand at 1816.872 kb on + strand at 1816.872 kb on + strand at 1816.879 kb on + strand at 1816.880 kb on - strand at 1816.893 kb on + strand at 1816.893 kb on + strand at 1816.893 kb on + strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.894 kb on - strand at 1816.946 kb on + strand at 1816.947 kb on - strand at 1816.947 kb on - strand at 1816.998 kb on - strand at 1817.626 kb on + strand, within ABZR86_RS08150 at 1817.887 kb on + strand, within ABZR86_RS08155 at 1817.888 kb on - strand, within ABZR86_RS08155 at 1817.888 kb on - strand, within ABZR86_RS08155 at 1817.935 kb on + strand, within ABZR86_RS08155 at 1817.935 kb on + strand, within ABZR86_RS08155 at 1818.010 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.061 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.316 kb on + strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.317 kb on - strand, within ABZR86_RS08155 at 1818.366 kb on - strand at 1818.519 kb on + strand, within ABZR86_RS08160 at 1818.520 kb on - strand, within ABZR86_RS08160
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml remove 1,816,304 - -3.0 1,816,304 - -0.5 1,816,304 - -0.4 1,816,383 + -0.2 1,816,383 + -0.8 1,816,384 - +0.2 1,816,384 - -0.0 1,816,384 - -0.1 1,816,384 - +0.8 1,816,461 + ABZR86_RS08145 0.12 +1.2 1,816,741 + ABZR86_RS08145 0.76 -0.7 1,816,742 - ABZR86_RS08145 0.76 -0.6 1,816,742 - ABZR86_RS08145 0.76 +0.5 1,816,742 - ABZR86_RS08145 0.76 +0.2 1,816,795 + ABZR86_RS08145 0.88 -0.5 1,816,796 - ABZR86_RS08145 0.88 -2.5 1,816,847 - -0.4 1,816,856 + -0.6 1,816,856 + +0.3 1,816,857 - -0.4 1,816,872 + +0.1 1,816,872 + -0.1 1,816,879 + -0.9 1,816,880 - +0.8 1,816,893 + -0.3 1,816,893 + -0.5 1,816,893 + -0.4 1,816,894 - -0.3 1,816,894 - -0.0 1,816,894 - +1.1 1,816,894 - -0.6 1,816,894 - +0.4 1,816,946 + -0.2 1,816,947 - -0.6 1,816,947 - -1.0 1,816,998 - -0.9 1,817,626 + ABZR86_RS08150 0.84 -0.5 1,817,887 + ABZR86_RS08155 0.21 -0.1 1,817,888 - ABZR86_RS08155 0.21 +0.2 1,817,888 - ABZR86_RS08155 0.21 -0.1 1,817,935 + ABZR86_RS08155 0.28 -0.9 1,817,935 + ABZR86_RS08155 0.28 +0.7 1,818,010 + ABZR86_RS08155 0.40 +0.3 1,818,061 + ABZR86_RS08155 0.48 +1.5 1,818,061 + ABZR86_RS08155 0.48 +0.1 1,818,061 + ABZR86_RS08155 0.48 -0.3 1,818,316 + ABZR86_RS08155 0.88 -0.6 1,818,316 + ABZR86_RS08155 0.88 +0.3 1,818,316 + ABZR86_RS08155 0.88 -0.9 1,818,317 - ABZR86_RS08155 0.88 +0.4 1,818,317 - ABZR86_RS08155 0.88 +1.5 1,818,317 - ABZR86_RS08155 0.88 +0.4 1,818,317 - ABZR86_RS08155 0.88 -0.1 1,818,366 - -2.0 1,818,519 + ABZR86_RS08160 0.12 +0.6 1,818,520 - ABZR86_RS08160 0.12 -0.5
Or see this region's nucleotide sequence