Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS07885

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS07875 and ABZR86_RS07880 are separated by 127 nucleotidesABZR86_RS07880 and ABZR86_RS07885 are separated by 103 nucleotidesABZR86_RS07885 and ABZR86_RS07890 are separated by 49 nucleotidesABZR86_RS07890 and ABZR86_RS07895 are separated by 124 nucleotides ABZR86_RS07875: ABZR86_RS07875 - hypothetical protein, at 1,751,085 to 1,752,386 _RS07875 ABZR86_RS07880: ABZR86_RS07880 - 30S ribosomal protein THX, at 1,752,514 to 1,752,678 _RS07880 ABZR86_RS07885: ABZR86_RS07885 - cation diffusion facilitator family transporter, at 1,752,782 to 1,753,765 _RS07885 ABZR86_RS07890: ABZR86_RS07890 - MerC domain-containing protein, at 1,753,815 to 1,754,237 _RS07890 ABZR86_RS07895: ABZR86_RS07895 - TonB-dependent receptor, at 1,754,362 to 1,756,362 _RS07895 Position (kb) 1752 1753 1754Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1751.788 kb on - strand, within ABZR86_RS07875at 1752.075 kb on + strand, within ABZR86_RS07875at 1752.208 kb on - strand, within ABZR86_RS07875at 1752.208 kb on - strand, within ABZR86_RS07875at 1752.208 kb on - strand, within ABZR86_RS07875at 1752.427 kb on - strandat 1752.626 kb on + strand, within ABZR86_RS07880at 1752.626 kb on + strand, within ABZR86_RS07880at 1752.626 kb on + strand, within ABZR86_RS07880at 1752.627 kb on - strand, within ABZR86_RS07880at 1752.638 kb on + strand, within ABZR86_RS07880at 1752.638 kb on + strand, within ABZR86_RS07880at 1752.690 kb on + strandat 1752.691 kb on - strandat 1752.697 kb on + strandat 1752.710 kb on + strandat 1752.711 kb on - strandat 1752.732 kb on + strandat 1753.232 kb on + strand, within ABZR86_RS07885at 1753.233 kb on - strand, within ABZR86_RS07885at 1753.233 kb on - strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.467 kb on + strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.468 kb on - strand, within ABZR86_RS07885at 1753.776 kb on + strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.777 kb on - strandat 1753.940 kb on - strand, within ABZR86_RS07890at 1754.250 kb on - strandat 1754.340 kb on + strandat 1754.341 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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1,751,788 - ABZR86_RS07875 0.54 +0.8
1,752,075 + ABZR86_RS07875 0.76 -0.6
1,752,208 - ABZR86_RS07875 0.86 +0.5
1,752,208 - ABZR86_RS07875 0.86 +0.2
1,752,208 - ABZR86_RS07875 0.86 -0.4
1,752,427 - -0.3
1,752,626 + ABZR86_RS07880 0.68 -0.2
1,752,626 + ABZR86_RS07880 0.68 -0.4
1,752,626 + ABZR86_RS07880 0.68 -0.0
1,752,627 - ABZR86_RS07880 0.68 -0.6
1,752,638 + ABZR86_RS07880 0.75 +0.1
1,752,638 + ABZR86_RS07880 0.75 -0.4
1,752,690 + +1.0
1,752,691 - -0.7
1,752,697 + -0.5
1,752,710 + +0.1
1,752,711 - -0.4
1,752,732 + +0.9
1,753,232 + ABZR86_RS07885 0.46 -0.8
1,753,233 - ABZR86_RS07885 0.46 -0.8
1,753,233 - ABZR86_RS07885 0.46 +0.8
1,753,467 + ABZR86_RS07885 0.70 +1.0
1,753,467 + ABZR86_RS07885 0.70 +0.3
1,753,467 + ABZR86_RS07885 0.70 +3.2
1,753,467 + ABZR86_RS07885 0.70 +1.0
1,753,468 - ABZR86_RS07885 0.70 +0.2
1,753,468 - ABZR86_RS07885 0.70 +1.2
1,753,468 - ABZR86_RS07885 0.70 +0.5
1,753,468 - ABZR86_RS07885 0.70 -0.2
1,753,468 - ABZR86_RS07885 0.70 -0.4
1,753,468 - ABZR86_RS07885 0.70 +0.4
1,753,468 - ABZR86_RS07885 0.70 -1.3
1,753,776 + -0.3
1,753,777 - -2.4
1,753,777 - -0.2
1,753,777 - -0.8
1,753,940 - ABZR86_RS07890 0.30 -0.5
1,754,250 - -0.7
1,754,340 + -0.1
1,754,341 - -0.3

Or see this region's nucleotide sequence