Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06385

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06375 and ABZR86_RS06380 are separated by 68 nucleotidesABZR86_RS06380 and ABZR86_RS06385 overlap by 4 nucleotidesABZR86_RS06385 and ABZR86_RS06390 overlap by 14 nucleotides ABZR86_RS06375: ABZR86_RS06375 - TatD family hydrolase, at 1,418,633 to 1,419,400 _RS06375 ABZR86_RS06380: ABZR86_RS06380 - MarR family transcriptional regulator, at 1,419,469 to 1,419,996 _RS06380 ABZR86_RS06385: ABZR86_RS06385 - efflux transporter outer membrane subunit, at 1,419,993 to 1,421,501 _RS06385 ABZR86_RS06390: ABZR86_RS06390 - HlyD family efflux transporter periplasmic adaptor subunit, at 1,421,488 to 1,422,690 _RS06390 Position (kb) 1419 1420 1421 1422Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1419.057 kb on + strand, within ABZR86_RS06375at 1419.057 kb on + strand, within ABZR86_RS06375at 1419.171 kb on - strand, within ABZR86_RS06375at 1419.171 kb on - strand, within ABZR86_RS06375at 1419.221 kb on + strand, within ABZR86_RS06375at 1419.222 kb on - strand, within ABZR86_RS06375at 1419.350 kb on - strandat 1419.436 kb on + strandat 1419.436 kb on + strandat 1419.436 kb on + strandat 1419.439 kb on + strandat 1419.439 kb on + strandat 1419.440 kb on - strandat 1419.455 kb on + strandat 1419.670 kb on + strand, within ABZR86_RS06380at 1419.670 kb on + strand, within ABZR86_RS06380at 1419.671 kb on - strand, within ABZR86_RS06380at 1419.671 kb on - strand, within ABZR86_RS06380at 1419.671 kb on - strand, within ABZR86_RS06380at 1419.738 kb on + strand, within ABZR86_RS06380at 1419.738 kb on + strand, within ABZR86_RS06380at 1419.738 kb on + strand, within ABZR86_RS06380at 1419.738 kb on + strand, within ABZR86_RS06380at 1419.739 kb on - strand, within ABZR86_RS06380at 1420.333 kb on + strand, within ABZR86_RS06385at 1420.333 kb on + strand, within ABZR86_RS06385at 1420.334 kb on - strand, within ABZR86_RS06385at 1420.334 kb on - strand, within ABZR86_RS06385at 1420.334 kb on - strand, within ABZR86_RS06385at 1420.396 kb on - strand, within ABZR86_RS06385at 1420.396 kb on - strand, within ABZR86_RS06385at 1420.396 kb on - strand, within ABZR86_RS06385at 1420.428 kb on + strand, within ABZR86_RS06385at 1420.547 kb on + strand, within ABZR86_RS06385at 1420.551 kb on + strand, within ABZR86_RS06385at 1420.551 kb on + strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.552 kb on - strand, within ABZR86_RS06385at 1420.620 kb on + strand, within ABZR86_RS06385at 1420.620 kb on + strand, within ABZR86_RS06385at 1420.621 kb on - strand, within ABZR86_RS06385at 1420.645 kb on + strand, within ABZR86_RS06385at 1421.130 kb on + strand, within ABZR86_RS06385at 1421.130 kb on + strand, within ABZR86_RS06385at 1421.130 kb on + strand, within ABZR86_RS06385at 1421.131 kb on - strand, within ABZR86_RS06385at 1421.131 kb on - strand, within ABZR86_RS06385at 1421.407 kb on - strandat 1421.668 kb on + strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1421.669 kb on - strand, within ABZR86_RS06390at 1422.175 kb on + strand, within ABZR86_RS06390at 1422.176 kb on - strand, within ABZR86_RS06390at 1422.337 kb on + strand, within ABZR86_RS06390at 1422.338 kb on - strand, within ABZR86_RS06390at 1422.338 kb on - strand, within ABZR86_RS06390at 1422.338 kb on - strand, within ABZR86_RS06390at 1422.355 kb on + strand, within ABZR86_RS06390at 1422.356 kb on - strand, within ABZR86_RS06390

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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1,419,057 + ABZR86_RS06375 0.55 -0.6
1,419,057 + ABZR86_RS06375 0.55 -0.3
1,419,171 - ABZR86_RS06375 0.70 -0.8
1,419,171 - ABZR86_RS06375 0.70 +0.3
1,419,221 + ABZR86_RS06375 0.77 -0.8
1,419,222 - ABZR86_RS06375 0.77 +0.5
1,419,350 - -0.4
1,419,436 + -0.4
1,419,436 + +0.6
1,419,436 + -0.4
1,419,439 + -1.4
1,419,439 + -0.3
1,419,440 - -0.8
1,419,455 + +0.1
1,419,670 + ABZR86_RS06380 0.38 -0.4
1,419,670 + ABZR86_RS06380 0.38 -2.6
1,419,671 - ABZR86_RS06380 0.38 +0.6
1,419,671 - ABZR86_RS06380 0.38 +3.4
1,419,671 - ABZR86_RS06380 0.38 -0.1
1,419,738 + ABZR86_RS06380 0.51 +1.0
1,419,738 + ABZR86_RS06380 0.51 -0.3
1,419,738 + ABZR86_RS06380 0.51 +0.3
1,419,738 + ABZR86_RS06380 0.51 -0.8
1,419,739 - ABZR86_RS06380 0.51 +0.6
1,420,333 + ABZR86_RS06385 0.23 +0.3
1,420,333 + ABZR86_RS06385 0.23 -0.1
1,420,334 - ABZR86_RS06385 0.23 -0.4
1,420,334 - ABZR86_RS06385 0.23 +0.3
1,420,334 - ABZR86_RS06385 0.23 -0.8
1,420,396 - ABZR86_RS06385 0.27 +0.4
1,420,396 - ABZR86_RS06385 0.27 +0.3
1,420,396 - ABZR86_RS06385 0.27 -0.5
1,420,428 + ABZR86_RS06385 0.29 +0.1
1,420,547 + ABZR86_RS06385 0.37 -0.3
1,420,551 + ABZR86_RS06385 0.37 -0.6
1,420,551 + ABZR86_RS06385 0.37 +0.5
1,420,552 - ABZR86_RS06385 0.37 -1.5
1,420,552 - ABZR86_RS06385 0.37 -0.5
1,420,552 - ABZR86_RS06385 0.37 +2.5
1,420,552 - ABZR86_RS06385 0.37 +0.3
1,420,552 - ABZR86_RS06385 0.37 -0.6
1,420,552 - ABZR86_RS06385 0.37 -0.9
1,420,552 - ABZR86_RS06385 0.37 -0.3
1,420,552 - ABZR86_RS06385 0.37 -0.4
1,420,620 + ABZR86_RS06385 0.42 -0.3
1,420,620 + ABZR86_RS06385 0.42 +0.4
1,420,621 - ABZR86_RS06385 0.42 +1.0
1,420,645 + ABZR86_RS06385 0.43 +1.0
1,421,130 + ABZR86_RS06385 0.75 -0.0
1,421,130 + ABZR86_RS06385 0.75 -0.9
1,421,130 + ABZR86_RS06385 0.75 +1.2
1,421,131 - ABZR86_RS06385 0.75 +0.2
1,421,131 - ABZR86_RS06385 0.75 -1.0
1,421,407 - -1.6
1,421,668 + ABZR86_RS06390 0.15 +0.1
1,421,669 - ABZR86_RS06390 0.15 +0.9
1,421,669 - ABZR86_RS06390 0.15 +0.8
1,421,669 - ABZR86_RS06390 0.15 -0.7
1,421,669 - ABZR86_RS06390 0.15 +0.5
1,421,669 - ABZR86_RS06390 0.15 +0.1
1,421,669 - ABZR86_RS06390 0.15 -0.8
1,421,669 - ABZR86_RS06390 0.15 +0.6
1,422,175 + ABZR86_RS06390 0.57 +0.1
1,422,176 - ABZR86_RS06390 0.57 +0.5
1,422,337 + ABZR86_RS06390 0.71 +0.1
1,422,338 - ABZR86_RS06390 0.71 +0.4
1,422,338 - ABZR86_RS06390 0.71 +0.1
1,422,338 - ABZR86_RS06390 0.71 -0.0
1,422,355 + ABZR86_RS06390 0.72 +0.7
1,422,356 - ABZR86_RS06390 0.72 -0.1

Or see this region's nucleotide sequence