Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS06155

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS06145 and ABZR86_RS06150 overlap by 4 nucleotidesABZR86_RS06150 and ABZR86_RS06155 overlap by 1 nucleotidesABZR86_RS06155 and ABZR86_RS06160 are separated by 7 nucleotides ABZR86_RS06145: ABZR86_RS06145 - endolytic transglycosylase MltG, at 1,378,404 to 1,379,441 _RS06145 ABZR86_RS06150: ABZR86_RS06150 - aminodeoxychorismate lyase, at 1,379,438 to 1,380,256 _RS06150 ABZR86_RS06155: ABZR86_RS06155 - aminodeoxychorismate synthase component I, at 1,380,256 to 1,381,605 _RS06155 ABZR86_RS06160: ABZR86_RS06160 - beta-ketoacyl-ACP synthase II, at 1,381,613 to 1,382,851 _RS06160 Position (kb) 1380 1381 1382Strain fitness (log2 ratio) -2 -1 0 1 2at 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.442 kb on - strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.511 kb on + strandat 1379.512 kb on - strandat 1379.512 kb on - strandat 1379.512 kb on - strandat 1379.512 kb on - strandat 1379.512 kb on - strandat 1379.512 kb on - strandat 1379.967 kb on + strand, within ABZR86_RS06150at 1379.968 kb on - strand, within ABZR86_RS06150at 1379.968 kb on - strand, within ABZR86_RS06150at 1379.968 kb on - strand, within ABZR86_RS06150at 1380.032 kb on + strand, within ABZR86_RS06150at 1380.090 kb on - strand, within ABZR86_RS06150at 1380.437 kb on + strand, within ABZR86_RS06155at 1380.438 kb on - strand, within ABZR86_RS06155at 1380.438 kb on - strand, within ABZR86_RS06155at 1380.456 kb on - strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.623 kb on + strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.624 kb on - strand, within ABZR86_RS06155at 1380.932 kb on + strand, within ABZR86_RS06155at 1381.003 kb on - strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.292 kb on + strand, within ABZR86_RS06155at 1381.293 kb on - strand, within ABZR86_RS06155at 1381.293 kb on - strand, within ABZR86_RS06155

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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1,379,442 - -0.3
1,379,442 - +0.7
1,379,442 - +0.8
1,379,442 - -0.6
1,379,442 - +1.2
1,379,442 - +0.6
1,379,442 - -0.0
1,379,442 - +0.3
1,379,442 - +0.2
1,379,511 + +0.4
1,379,511 + +1.6
1,379,511 + +0.1
1,379,511 + -0.0
1,379,511 + +0.5
1,379,511 + +1.8
1,379,511 + +0.7
1,379,511 + -1.0
1,379,512 - +0.0
1,379,512 - -1.0
1,379,512 - -0.7
1,379,512 - -1.2
1,379,512 - +0.1
1,379,512 - +0.3
1,379,967 + ABZR86_RS06150 0.65 -0.2
1,379,968 - ABZR86_RS06150 0.65 +0.3
1,379,968 - ABZR86_RS06150 0.65 +0.6
1,379,968 - ABZR86_RS06150 0.65 -0.1
1,380,032 + ABZR86_RS06150 0.73 +1.3
1,380,090 - ABZR86_RS06150 0.80 +0.4
1,380,437 + ABZR86_RS06155 0.13 +0.1
1,380,438 - ABZR86_RS06155 0.13 -0.3
1,380,438 - ABZR86_RS06155 0.13 -0.4
1,380,456 - ABZR86_RS06155 0.15 +0.3
1,380,623 + ABZR86_RS06155 0.27 -0.4
1,380,623 + ABZR86_RS06155 0.27 +0.7
1,380,623 + ABZR86_RS06155 0.27 -0.0
1,380,623 + ABZR86_RS06155 0.27 +1.9
1,380,623 + ABZR86_RS06155 0.27 -0.2
1,380,623 + ABZR86_RS06155 0.27 -0.1
1,380,623 + ABZR86_RS06155 0.27 +0.2
1,380,624 - ABZR86_RS06155 0.27 +0.7
1,380,624 - ABZR86_RS06155 0.27 -0.8
1,380,624 - ABZR86_RS06155 0.27 +0.4
1,380,624 - ABZR86_RS06155 0.27 +1.4
1,380,624 - ABZR86_RS06155 0.27 -0.7
1,380,624 - ABZR86_RS06155 0.27 -1.1
1,380,624 - ABZR86_RS06155 0.27 -0.2
1,380,624 - ABZR86_RS06155 0.27 -0.6
1,380,624 - ABZR86_RS06155 0.27 -1.2
1,380,932 + ABZR86_RS06155 0.50 -0.2
1,381,003 - ABZR86_RS06155 0.55 -0.2
1,381,292 + ABZR86_RS06155 0.77 -1.2
1,381,292 + ABZR86_RS06155 0.77 +0.7
1,381,292 + ABZR86_RS06155 0.77 -0.1
1,381,292 + ABZR86_RS06155 0.77 -1.4
1,381,293 - ABZR86_RS06155 0.77 -0.0
1,381,293 - ABZR86_RS06155 0.77 -1.8

Or see this region's nucleotide sequence