Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS05620

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS05610 and ABZR86_RS05615 are separated by 87 nucleotidesABZR86_RS05615 and ABZR86_RS05620 are separated by 19 nucleotidesABZR86_RS05620 and ABZR86_RS05625 overlap by 16 nucleotides ABZR86_RS05610: ABZR86_RS05610 - 2OG-Fe(II) oxygenase, at 1,269,200 to 1,269,895 _RS05610 ABZR86_RS05615: ABZR86_RS05615 - tetratricopeptide repeat protein, at 1,269,983 to 1,270,741 _RS05615 ABZR86_RS05620: ABZR86_RS05620 - prolipoprotein diacylglyceryl transferase family protein, at 1,270,761 to 1,271,510 _RS05620 ABZR86_RS05625: ABZR86_RS05625 - radical SAM protein, at 1,271,495 to 1,272,931 _RS05625 Position (kb) 1270 1271 1272Strain fitness (log2 ratio) -2 -1 0 1 2at 1269.940 kb on + strandat 1269.941 kb on - strandat 1269.941 kb on - strandat 1270.061 kb on + strand, within ABZR86_RS05615at 1270.062 kb on - strand, within ABZR86_RS05615at 1270.062 kb on - strand, within ABZR86_RS05615at 1270.062 kb on - strand, within ABZR86_RS05615at 1270.091 kb on + strand, within ABZR86_RS05615at 1270.091 kb on + strand, within ABZR86_RS05615at 1270.092 kb on - strand, within ABZR86_RS05615at 1270.092 kb on - strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.109 kb on + strand, within ABZR86_RS05615at 1270.110 kb on - strand, within ABZR86_RS05615at 1270.110 kb on - strand, within ABZR86_RS05615at 1270.110 kb on - strand, within ABZR86_RS05615at 1270.110 kb on - strand, within ABZR86_RS05615at 1270.110 kb on - strand, within ABZR86_RS05615at 1270.113 kb on + strand, within ABZR86_RS05615at 1270.113 kb on + strand, within ABZR86_RS05615at 1270.113 kb on + strand, within ABZR86_RS05615at 1270.113 kb on + strand, within ABZR86_RS05615at 1270.113 kb on + strand, within ABZR86_RS05615at 1270.114 kb on - strand, within ABZR86_RS05615at 1270.114 kb on - strand, within ABZR86_RS05615at 1270.114 kb on - strand, within ABZR86_RS05615at 1270.114 kb on - strand, within ABZR86_RS05615at 1270.114 kb on - strand, within ABZR86_RS05615at 1270.292 kb on + strand, within ABZR86_RS05615at 1270.293 kb on - strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.337 kb on + strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.338 kb on - strand, within ABZR86_RS05615at 1270.397 kb on + strand, within ABZR86_RS05615at 1270.397 kb on + strand, within ABZR86_RS05615at 1270.476 kb on - strand, within ABZR86_RS05615at 1270.526 kb on + strand, within ABZR86_RS05615at 1270.526 kb on + strand, within ABZR86_RS05615at 1270.547 kb on + strand, within ABZR86_RS05615at 1270.547 kb on + strand, within ABZR86_RS05615at 1270.547 kb on + strand, within ABZR86_RS05615at 1270.548 kb on - strand, within ABZR86_RS05615at 1270.548 kb on - strand, within ABZR86_RS05615at 1270.548 kb on - strand, within ABZR86_RS05615at 1270.664 kb on + strand, within ABZR86_RS05615at 1270.665 kb on - strand, within ABZR86_RS05615at 1270.665 kb on - strand, within ABZR86_RS05615at 1270.668 kb on - strandat 1270.803 kb on + strandat 1270.804 kb on - strandat 1271.166 kb on + strand, within ABZR86_RS05620at 1271.166 kb on + strand, within ABZR86_RS05620at 1271.166 kb on + strand, within ABZR86_RS05620at 1271.166 kb on + strand, within ABZR86_RS05620at 1271.167 kb on - strand, within ABZR86_RS05620at 1271.167 kb on - strand, within ABZR86_RS05620at 1271.167 kb on - strand, within ABZR86_RS05620at 1271.167 kb on - strand, within ABZR86_RS05620at 1271.238 kb on + strand, within ABZR86_RS05620at 1271.239 kb on - strand, within ABZR86_RS05620at 1271.266 kb on - strand, within ABZR86_RS05620at 1271.266 kb on - strand, within ABZR86_RS05620at 1271.337 kb on + strand, within ABZR86_RS05620at 1271.338 kb on - strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.382 kb on + strand, within ABZR86_RS05620at 1271.383 kb on - strand, within ABZR86_RS05620at 1271.383 kb on - strand, within ABZR86_RS05620at 1271.383 kb on - strand, within ABZR86_RS05620at 1271.388 kb on + strand, within ABZR86_RS05620at 1271.388 kb on + strand, within ABZR86_RS05620at 1271.389 kb on - strand, within ABZR86_RS05620at 1271.389 kb on - strand, within ABZR86_RS05620at 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.439 kb on + strandat 1271.440 kb on - strandat 1271.440 kb on - strandat 1271.440 kb on - strandat 1271.440 kb on - strandat 1271.440 kb on - strandat 1271.442 kb on + strandat 1271.442 kb on + strandat 1271.442 kb on + strandat 1271.442 kb on + strandat 1271.443 kb on - strandat 1271.443 kb on - strandat 1271.508 kb on + strandat 1271.508 kb on + strandat 1271.508 kb on + strandat 1271.508 kb on + strandat 1271.509 kb on - strandat 1271.509 kb on - strandat 1271.516 kb on + strandat 1271.516 kb on + strandat 1271.516 kb on + strandat 1271.516 kb on + strandat 1271.516 kb on + strandat 1271.517 kb on - strandat 1271.525 kb on + strandat 1271.525 kb on + strandat 1271.525 kb on + strandat 1271.525 kb on + strandat 1271.525 kb on + strandat 1271.604 kb on - strandat 1271.604 kb on - strandat 1271.604 kb on - strandat 1271.666 kb on + strand, within ABZR86_RS05625at 1271.666 kb on + strand, within ABZR86_RS05625at 1271.666 kb on + strand, within ABZR86_RS05625at 1271.667 kb on - strand, within ABZR86_RS05625at 1271.667 kb on - strand, within ABZR86_RS05625at 1271.669 kb on + strand, within ABZR86_RS05625at 1271.670 kb on - strand, within ABZR86_RS05625at 1271.690 kb on + strand, within ABZR86_RS05625at 1271.690 kb on + strand, within ABZR86_RS05625at 1271.690 kb on + strand, within ABZR86_RS05625at 1271.690 kb on + strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.691 kb on - strand, within ABZR86_RS05625at 1271.738 kb on + strand, within ABZR86_RS05625at 1271.738 kb on + strand, within ABZR86_RS05625at 1271.738 kb on + strand, within ABZR86_RS05625at 1271.739 kb on - strand, within ABZR86_RS05625at 1271.739 kb on - strand, within ABZR86_RS05625at 1271.739 kb on - strand, within ABZR86_RS05625at 1271.750 kb on + strand, within ABZR86_RS05625at 1271.843 kb on + strand, within ABZR86_RS05625at 1271.843 kb on + strand, within ABZR86_RS05625at 1271.844 kb on - strand, within ABZR86_RS05625at 1272.113 kb on + strand, within ABZR86_RS05625at 1272.113 kb on + strand, within ABZR86_RS05625at 1272.359 kb on + strand, within ABZR86_RS05625at 1272.359 kb on + strand, within ABZR86_RS05625at 1272.360 kb on - strand, within ABZR86_RS05625at 1272.360 kb on - strand, within ABZR86_RS05625at 1272.360 kb on - strand, within ABZR86_RS05625at 1272.360 kb on - strand, within ABZR86_RS05625at 1272.360 kb on - strand, within ABZR86_RS05625at 1272.485 kb on + strand, within ABZR86_RS05625at 1272.485 kb on + strand, within ABZR86_RS05625at 1272.485 kb on + strand, within ABZR86_RS05625at 1272.485 kb on + strand, within ABZR86_RS05625at 1272.485 kb on + strand, within ABZR86_RS05625at 1272.486 kb on - strand, within ABZR86_RS05625at 1272.486 kb on - strand, within ABZR86_RS05625at 1272.486 kb on - strand, within ABZR86_RS05625

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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1,269,940 + -0.1
1,269,941 - +0.2
1,269,941 - +0.2
1,270,061 + ABZR86_RS05615 0.10 -0.1
1,270,062 - ABZR86_RS05615 0.10 +1.1
1,270,062 - ABZR86_RS05615 0.10 -0.7
1,270,062 - ABZR86_RS05615 0.10 +0.1
1,270,091 + ABZR86_RS05615 0.14 -0.1
1,270,091 + ABZR86_RS05615 0.14 +0.1
1,270,092 - ABZR86_RS05615 0.14 +0.4
1,270,092 - ABZR86_RS05615 0.14 +0.3
1,270,109 + ABZR86_RS05615 0.17 +0.3
1,270,109 + ABZR86_RS05615 0.17 -0.7
1,270,109 + ABZR86_RS05615 0.17 +1.0
1,270,109 + ABZR86_RS05615 0.17 +0.4
1,270,109 + ABZR86_RS05615 0.17 +0.1
1,270,109 + ABZR86_RS05615 0.17 -0.8
1,270,109 + ABZR86_RS05615 0.17 +0.6
1,270,109 + ABZR86_RS05615 0.17 +0.2
1,270,109 + ABZR86_RS05615 0.17 +0.2
1,270,110 - ABZR86_RS05615 0.17 -1.8
1,270,110 - ABZR86_RS05615 0.17 +0.2
1,270,110 - ABZR86_RS05615 0.17 -0.2
1,270,110 - ABZR86_RS05615 0.17 -0.0
1,270,110 - ABZR86_RS05615 0.17 -0.4
1,270,113 + ABZR86_RS05615 0.17 -0.4
1,270,113 + ABZR86_RS05615 0.17 -0.1
1,270,113 + ABZR86_RS05615 0.17 +0.2
1,270,113 + ABZR86_RS05615 0.17 -1.1
1,270,113 + ABZR86_RS05615 0.17 -0.6
1,270,114 - ABZR86_RS05615 0.17 +0.9
1,270,114 - ABZR86_RS05615 0.17 -0.2
1,270,114 - ABZR86_RS05615 0.17 +0.3
1,270,114 - ABZR86_RS05615 0.17 +1.4
1,270,114 - ABZR86_RS05615 0.17 +0.0
1,270,292 + ABZR86_RS05615 0.41 +0.3
1,270,293 - ABZR86_RS05615 0.41 +0.1
1,270,337 + ABZR86_RS05615 0.47 +0.1
1,270,337 + ABZR86_RS05615 0.47 -0.1
1,270,337 + ABZR86_RS05615 0.47 -0.5
1,270,337 + ABZR86_RS05615 0.47 +0.0
1,270,337 + ABZR86_RS05615 0.47 +0.0
1,270,337 + ABZR86_RS05615 0.47 +1.0
1,270,337 + ABZR86_RS05615 0.47 +0.2
1,270,337 + ABZR86_RS05615 0.47 +0.1
1,270,337 + ABZR86_RS05615 0.47 -0.3
1,270,337 + ABZR86_RS05615 0.47 -0.0
1,270,338 - ABZR86_RS05615 0.47 +0.1
1,270,338 - ABZR86_RS05615 0.47 -1.1
1,270,338 - ABZR86_RS05615 0.47 +1.1
1,270,338 - ABZR86_RS05615 0.47 +0.8
1,270,338 - ABZR86_RS05615 0.47 +1.1
1,270,338 - ABZR86_RS05615 0.47 +0.2
1,270,338 - ABZR86_RS05615 0.47 +0.6
1,270,397 + ABZR86_RS05615 0.55 -0.6
1,270,397 + ABZR86_RS05615 0.55 +0.1
1,270,476 - ABZR86_RS05615 0.65 +0.1
1,270,526 + ABZR86_RS05615 0.72 -1.0
1,270,526 + ABZR86_RS05615 0.72 +0.2
1,270,547 + ABZR86_RS05615 0.74 -0.1
1,270,547 + ABZR86_RS05615 0.74 +0.3
1,270,547 + ABZR86_RS05615 0.74 +0.6
1,270,548 - ABZR86_RS05615 0.74 +0.4
1,270,548 - ABZR86_RS05615 0.74 -0.0
1,270,548 - ABZR86_RS05615 0.74 +0.2
1,270,664 + ABZR86_RS05615 0.90 +0.1
1,270,665 - ABZR86_RS05615 0.90 -0.6
1,270,665 - ABZR86_RS05615 0.90 +0.3
1,270,668 - -2.3
1,270,803 + +0.1
1,270,804 - -0.3
1,271,166 + ABZR86_RS05620 0.54 -0.3
1,271,166 + ABZR86_RS05620 0.54 -0.2
1,271,166 + ABZR86_RS05620 0.54 -1.5
1,271,166 + ABZR86_RS05620 0.54 -0.6
1,271,167 - ABZR86_RS05620 0.54 +0.7
1,271,167 - ABZR86_RS05620 0.54 -1.5
1,271,167 - ABZR86_RS05620 0.54 -0.6
1,271,167 - ABZR86_RS05620 0.54 +0.7
1,271,238 + ABZR86_RS05620 0.64 -1.0
1,271,239 - ABZR86_RS05620 0.64 +0.2
1,271,266 - ABZR86_RS05620 0.67 +0.2
1,271,266 - ABZR86_RS05620 0.67 +0.3
1,271,337 + ABZR86_RS05620 0.77 +0.9
1,271,338 - ABZR86_RS05620 0.77 -0.3
1,271,382 + ABZR86_RS05620 0.83 -0.6
1,271,382 + ABZR86_RS05620 0.83 -1.3
1,271,382 + ABZR86_RS05620 0.83 -0.4
1,271,382 + ABZR86_RS05620 0.83 -0.4
1,271,382 + ABZR86_RS05620 0.83 -0.7
1,271,382 + ABZR86_RS05620 0.83 +0.3
1,271,382 + ABZR86_RS05620 0.83 -0.4
1,271,383 - ABZR86_RS05620 0.83 +0.7
1,271,383 - ABZR86_RS05620 0.83 +0.9
1,271,383 - ABZR86_RS05620 0.83 -0.4
1,271,388 + ABZR86_RS05620 0.84 -0.2
1,271,388 + ABZR86_RS05620 0.84 -0.3
1,271,389 - ABZR86_RS05620 0.84 -0.5
1,271,389 - ABZR86_RS05620 0.84 -0.9
1,271,439 + +0.1
1,271,439 + +0.5
1,271,439 + -0.4
1,271,439 + -0.1
1,271,439 + +0.8
1,271,439 + -0.0
1,271,439 + -0.5
1,271,440 - -0.9
1,271,440 - +1.4
1,271,440 - +0.0
1,271,440 - +0.9
1,271,440 - +0.1
1,271,442 + +0.4
1,271,442 + -0.8
1,271,442 + -0.4
1,271,442 + +0.6
1,271,443 - +1.0
1,271,443 - +0.1
1,271,508 + -1.1
1,271,508 + +0.2
1,271,508 + -0.9
1,271,508 + -0.3
1,271,509 - -0.9
1,271,509 - +0.6
1,271,516 + -0.2
1,271,516 + -0.6
1,271,516 + -0.1
1,271,516 + -0.1
1,271,516 + +0.7
1,271,517 - +0.1
1,271,525 + +0.4
1,271,525 + +1.0
1,271,525 + -0.0
1,271,525 + -0.8
1,271,525 + -0.2
1,271,604 - -0.2
1,271,604 - -1.0
1,271,604 - -0.5
1,271,666 + ABZR86_RS05625 0.12 +0.5
1,271,666 + ABZR86_RS05625 0.12 +0.6
1,271,666 + ABZR86_RS05625 0.12 -0.5
1,271,667 - ABZR86_RS05625 0.12 +0.3
1,271,667 - ABZR86_RS05625 0.12 +1.3
1,271,669 + ABZR86_RS05625 0.12 -0.3
1,271,670 - ABZR86_RS05625 0.12 -0.1
1,271,690 + ABZR86_RS05625 0.14 -0.6
1,271,690 + ABZR86_RS05625 0.14 +0.2
1,271,690 + ABZR86_RS05625 0.14 +0.3
1,271,690 + ABZR86_RS05625 0.14 -1.1
1,271,691 - ABZR86_RS05625 0.14 +0.9
1,271,691 - ABZR86_RS05625 0.14 -0.2
1,271,691 - ABZR86_RS05625 0.14 +0.2
1,271,691 - ABZR86_RS05625 0.14 +0.2
1,271,691 - ABZR86_RS05625 0.14 -1.0
1,271,691 - ABZR86_RS05625 0.14 -0.2
1,271,738 + ABZR86_RS05625 0.17 +1.3
1,271,738 + ABZR86_RS05625 0.17 -0.3
1,271,738 + ABZR86_RS05625 0.17 +0.5
1,271,739 - ABZR86_RS05625 0.17 +0.9
1,271,739 - ABZR86_RS05625 0.17 +1.0
1,271,739 - ABZR86_RS05625 0.17 +1.5
1,271,750 + ABZR86_RS05625 0.18 -0.5
1,271,843 + ABZR86_RS05625 0.24 +0.7
1,271,843 + ABZR86_RS05625 0.24 +0.8
1,271,844 - ABZR86_RS05625 0.24 -0.5
1,272,113 + ABZR86_RS05625 0.43 +0.0
1,272,113 + ABZR86_RS05625 0.43 +2.4
1,272,359 + ABZR86_RS05625 0.60 -0.4
1,272,359 + ABZR86_RS05625 0.60 +0.9
1,272,360 - ABZR86_RS05625 0.60 -0.4
1,272,360 - ABZR86_RS05625 0.60 -1.2
1,272,360 - ABZR86_RS05625 0.60 -0.8
1,272,360 - ABZR86_RS05625 0.60 -0.0
1,272,360 - ABZR86_RS05625 0.60 -1.3
1,272,485 + ABZR86_RS05625 0.69 +0.1
1,272,485 + ABZR86_RS05625 0.69 -0.2
1,272,485 + ABZR86_RS05625 0.69 +2.0
1,272,485 + ABZR86_RS05625 0.69 +0.2
1,272,485 + ABZR86_RS05625 0.69 +0.8
1,272,486 - ABZR86_RS05625 0.69 +0.6
1,272,486 - ABZR86_RS05625 0.69 +0.1
1,272,486 - ABZR86_RS05625 0.69 -0.1

Or see this region's nucleotide sequence