Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS03700

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS03690 and ABZR86_RS03695 are separated by 81 nucleotidesABZR86_RS03695 and ABZR86_RS03700 are separated by 31 nucleotidesABZR86_RS03700 and ABZR86_RS03705 are separated by 112 nucleotidesABZR86_RS03705 and ABZR86_RS03710 are separated by 60 nucleotides ABZR86_RS03690: ABZR86_RS03690 - DUF262 domain-containing protein, at 806,350 to 808,275 _RS03690 ABZR86_RS03695: ABZR86_RS03695 - hypothetical protein, at 808,357 to 809,076 _RS03695 ABZR86_RS03700: ABZR86_RS03700 - helix-turn-helix domain-containing protein, at 809,108 to 809,539 _RS03700 ABZR86_RS03705: ABZR86_RS03705 - SDR family NAD(P)-dependent oxidoreductase, at 809,652 to 810,377 _RS03705 ABZR86_RS03710: ABZR86_RS03710 - PLP-dependent aminotransferase family protein, at 810,438 to 811,925 _RS03710 Position (kb) 809 810Strain fitness (log2 ratio) -2 -1 0 1 2at 808.172 kb on - strandat 808.173 kb on + strandat 808.245 kb on + strandat 808.245 kb on + strandat 808.245 kb on + strandat 808.245 kb on + strandat 808.246 kb on - strandat 808.343 kb on + strandat 808.424 kb on + strandat 808.425 kb on - strandat 808.451 kb on + strand, within ABZR86_RS03695at 808.451 kb on + strand, within ABZR86_RS03695at 808.451 kb on + strand, within ABZR86_RS03695at 808.460 kb on + strand, within ABZR86_RS03695at 808.460 kb on + strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.461 kb on - strand, within ABZR86_RS03695at 808.483 kb on + strand, within ABZR86_RS03695at 808.483 kb on + strand, within ABZR86_RS03695at 808.484 kb on - strand, within ABZR86_RS03695at 808.568 kb on + strand, within ABZR86_RS03695at 808.569 kb on - strand, within ABZR86_RS03695at 808.585 kb on - strand, within ABZR86_RS03695at 808.585 kb on - strand, within ABZR86_RS03695at 808.659 kb on + strand, within ABZR86_RS03695at 808.661 kb on + strand, within ABZR86_RS03695at 808.661 kb on + strand, within ABZR86_RS03695at 808.661 kb on + strand, within ABZR86_RS03695at 808.661 kb on + strand, within ABZR86_RS03695at 808.662 kb on - strand, within ABZR86_RS03695at 808.665 kb on + strand, within ABZR86_RS03695at 808.665 kb on + strand, within ABZR86_RS03695at 808.691 kb on + strand, within ABZR86_RS03695at 808.691 kb on + strand, within ABZR86_RS03695at 808.692 kb on - strand, within ABZR86_RS03695at 808.743 kb on + strand, within ABZR86_RS03695at 808.743 kb on + strand, within ABZR86_RS03695at 808.744 kb on - strand, within ABZR86_RS03695at 808.871 kb on + strand, within ABZR86_RS03695at 808.917 kb on + strand, within ABZR86_RS03695at 808.918 kb on - strand, within ABZR86_RS03695at 808.918 kb on - strand, within ABZR86_RS03695at 808.923 kb on - strand, within ABZR86_RS03695at 809.035 kb on + strandat 809.036 kb on - strandat 809.074 kb on + strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.100 kb on - strandat 809.122 kb on - strandat 809.122 kb on - strandat 809.188 kb on + strand, within ABZR86_RS03700at 809.188 kb on + strand, within ABZR86_RS03700at 809.188 kb on + strand, within ABZR86_RS03700at 809.188 kb on + strand, within ABZR86_RS03700at 809.189 kb on - strand, within ABZR86_RS03700at 809.189 kb on - strand, within ABZR86_RS03700at 809.191 kb on + strand, within ABZR86_RS03700at 809.191 kb on + strand, within ABZR86_RS03700at 809.192 kb on - strand, within ABZR86_RS03700at 809.271 kb on + strand, within ABZR86_RS03700at 809.271 kb on + strand, within ABZR86_RS03700at 809.298 kb on + strand, within ABZR86_RS03700at 809.298 kb on + strand, within ABZR86_RS03700at 809.299 kb on - strand, within ABZR86_RS03700at 809.577 kb on - strandat 809.577 kb on - strandat 809.614 kb on - strandat 809.618 kb on - strandat 809.633 kb on + strandat 809.646 kb on + strandat 809.647 kb on - strandat 809.659 kb on - strandat 809.659 kb on - strandat 809.660 kb on + strandat 809.660 kb on + strandat 809.910 kb on + strand, within ABZR86_RS03705at 809.997 kb on + strand, within ABZR86_RS03705at 809.997 kb on + strand, within ABZR86_RS03705at 809.998 kb on - strand, within ABZR86_RS03705at 810.144 kb on + strand, within ABZR86_RS03705at 810.144 kb on + strand, within ABZR86_RS03705at 810.144 kb on + strand, within ABZR86_RS03705at 810.144 kb on + strand, within ABZR86_RS03705at 810.145 kb on - strand, within ABZR86_RS03705at 810.186 kb on + strand, within ABZR86_RS03705at 810.186 kb on + strand, within ABZR86_RS03705at 810.186 kb on + strand, within ABZR86_RS03705at 810.187 kb on - strand, within ABZR86_RS03705at 810.187 kb on - strand, within ABZR86_RS03705at 810.494 kb on - strandat 810.517 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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808,172 - -1.0
808,173 + +0.9
808,245 + +0.1
808,245 + +0.4
808,245 + +0.5
808,245 + -0.1
808,246 - -0.8
808,343 + +0.8
808,424 + -0.7
808,425 - +0.2
808,451 + ABZR86_RS03695 0.13 +0.3
808,451 + ABZR86_RS03695 0.13 +1.1
808,451 + ABZR86_RS03695 0.13 -0.5
808,460 + ABZR86_RS03695 0.14 +0.9
808,460 + ABZR86_RS03695 0.14 +0.2
808,461 - ABZR86_RS03695 0.14 +0.1
808,461 - ABZR86_RS03695 0.14 -1.6
808,461 - ABZR86_RS03695 0.14 -0.9
808,461 - ABZR86_RS03695 0.14 +0.3
808,461 - ABZR86_RS03695 0.14 +0.1
808,461 - ABZR86_RS03695 0.14 +1.6
808,483 + ABZR86_RS03695 0.17 +0.1
808,483 + ABZR86_RS03695 0.17 +0.6
808,484 - ABZR86_RS03695 0.18 -1.7
808,568 + ABZR86_RS03695 0.29 -0.2
808,569 - ABZR86_RS03695 0.29 -0.8
808,585 - ABZR86_RS03695 0.32 -1.2
808,585 - ABZR86_RS03695 0.32 +0.1
808,659 + ABZR86_RS03695 0.42 -0.2
808,661 + ABZR86_RS03695 0.42 +0.2
808,661 + ABZR86_RS03695 0.42 -0.3
808,661 + ABZR86_RS03695 0.42 -0.1
808,661 + ABZR86_RS03695 0.42 -0.8
808,662 - ABZR86_RS03695 0.42 -0.9
808,665 + ABZR86_RS03695 0.43 -2.0
808,665 + ABZR86_RS03695 0.43 -0.2
808,691 + ABZR86_RS03695 0.46 -0.5
808,691 + ABZR86_RS03695 0.46 -0.6
808,692 - ABZR86_RS03695 0.47 +1.0
808,743 + ABZR86_RS03695 0.54 -0.1
808,743 + ABZR86_RS03695 0.54 -0.6
808,744 - ABZR86_RS03695 0.54 -0.0
808,871 + ABZR86_RS03695 0.71 -1.4
808,917 + ABZR86_RS03695 0.78 +0.5
808,918 - ABZR86_RS03695 0.78 +0.0
808,918 - ABZR86_RS03695 0.78 +0.1
808,923 - ABZR86_RS03695 0.79 +0.1
809,035 + -0.0
809,036 - -1.6
809,074 + +1.1
809,100 - -1.6
809,100 - -0.2
809,100 - -0.1
809,100 - +0.7
809,100 - -0.1
809,100 - -1.0
809,100 - -0.3
809,122 - +0.1
809,122 - -0.7
809,188 + ABZR86_RS03700 0.19 -0.0
809,188 + ABZR86_RS03700 0.19 +0.8
809,188 + ABZR86_RS03700 0.19 +0.4
809,188 + ABZR86_RS03700 0.19 -1.3
809,189 - ABZR86_RS03700 0.19 -1.3
809,189 - ABZR86_RS03700 0.19 -2.1
809,191 + ABZR86_RS03700 0.19 -0.2
809,191 + ABZR86_RS03700 0.19 -1.4
809,192 - ABZR86_RS03700 0.19 +0.2
809,271 + ABZR86_RS03700 0.38 -0.0
809,271 + ABZR86_RS03700 0.38 +0.2
809,298 + ABZR86_RS03700 0.44 -0.4
809,298 + ABZR86_RS03700 0.44 -0.5
809,299 - ABZR86_RS03700 0.44 +0.7
809,577 - +0.9
809,577 - +0.2
809,614 - +0.5
809,618 - +0.3
809,633 + -0.8
809,646 + +0.2
809,647 - -0.8
809,659 - +0.0
809,659 - +0.7
809,660 + +0.6
809,660 + -0.6
809,910 + ABZR86_RS03705 0.36 -0.4
809,997 + ABZR86_RS03705 0.48 +0.0
809,997 + ABZR86_RS03705 0.48 +0.6
809,998 - ABZR86_RS03705 0.48 +0.3
810,144 + ABZR86_RS03705 0.68 -0.5
810,144 + ABZR86_RS03705 0.68 -0.4
810,144 + ABZR86_RS03705 0.68 +0.9
810,144 + ABZR86_RS03705 0.68 +1.9
810,145 - ABZR86_RS03705 0.68 +0.3
810,186 + ABZR86_RS03705 0.74 +0.3
810,186 + ABZR86_RS03705 0.74 +0.0
810,186 + ABZR86_RS03705 0.74 -0.6
810,187 - ABZR86_RS03705 0.74 -1.1
810,187 - ABZR86_RS03705 0.74 -0.1
810,494 - -0.4
810,517 + +0.7

Or see this region's nucleotide sequence