Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS01485

Experiment: Fusidic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS01480 and ABZR86_RS01485 are separated by 298 nucleotidesABZR86_RS01485 and ABZR86_RS01490 are separated by 110 nucleotides ABZR86_RS01480: ABZR86_RS01480 - hypothetical protein, at 317,475 to 317,945 _RS01480 ABZR86_RS01485: ABZR86_RS01485 - DUF1565 domain-containing protein, at 318,244 to 319,797 _RS01485 ABZR86_RS01490: ABZR86_RS01490 - DUF2334 domain-containing protein, at 319,908 to 321,620 _RS01490 Position (kb) 318 319 320Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.244 kb on - strandat 317.271 kb on + strandat 317.272 kb on - strandat 317.447 kb on + strandat 317.447 kb on + strandat 317.447 kb on + strandat 317.447 kb on + strandat 317.447 kb on + strandat 317.448 kb on - strandat 317.448 kb on - strandat 317.448 kb on - strandat 317.668 kb on + strand, within ABZR86_RS01480at 317.669 kb on - strand, within ABZR86_RS01480at 317.764 kb on - strand, within ABZR86_RS01480at 317.937 kb on + strandat 317.968 kb on + strandat 318.231 kb on + strandat 318.231 kb on + strandat 318.337 kb on + strandat 318.337 kb on + strandat 318.337 kb on + strandat 318.337 kb on + strandat 318.337 kb on + strandat 318.338 kb on - strandat 318.338 kb on - strandat 318.338 kb on - strandat 318.338 kb on - strandat 318.338 kb on - strandat 318.341 kb on - strandat 318.442 kb on + strand, within ABZR86_RS01485at 318.443 kb on - strand, within ABZR86_RS01485at 318.443 kb on - strand, within ABZR86_RS01485at 318.443 kb on - strand, within ABZR86_RS01485at 318.460 kb on + strand, within ABZR86_RS01485at 318.460 kb on + strand, within ABZR86_RS01485at 318.460 kb on + strand, within ABZR86_RS01485at 318.460 kb on + strand, within ABZR86_RS01485at 318.461 kb on - strand, within ABZR86_RS01485at 318.461 kb on - strand, within ABZR86_RS01485at 318.461 kb on - strand, within ABZR86_RS01485at 318.462 kb on + strand, within ABZR86_RS01485at 318.616 kb on + strand, within ABZR86_RS01485at 318.616 kb on + strand, within ABZR86_RS01485at 318.617 kb on - strand, within ABZR86_RS01485at 318.649 kb on + strand, within ABZR86_RS01485at 318.649 kb on + strand, within ABZR86_RS01485at 318.649 kb on + strand, within ABZR86_RS01485at 318.649 kb on + strand, within ABZR86_RS01485at 318.649 kb on + strand, within ABZR86_RS01485at 318.650 kb on - strand, within ABZR86_RS01485at 318.650 kb on - strand, within ABZR86_RS01485at 318.688 kb on + strand, within ABZR86_RS01485at 318.688 kb on + strand, within ABZR86_RS01485at 318.688 kb on + strand, within ABZR86_RS01485at 318.689 kb on - strand, within ABZR86_RS01485at 318.689 kb on - strand, within ABZR86_RS01485at 318.689 kb on - strand, within ABZR86_RS01485at 318.689 kb on - strand, within ABZR86_RS01485at 318.689 kb on - strand, within ABZR86_RS01485at 318.718 kb on - strand, within ABZR86_RS01485at 318.796 kb on + strand, within ABZR86_RS01485at 318.796 kb on + strand, within ABZR86_RS01485at 318.797 kb on - strand, within ABZR86_RS01485at 319.048 kb on + strand, within ABZR86_RS01485at 319.048 kb on + strand, within ABZR86_RS01485at 319.048 kb on + strand, within ABZR86_RS01485at 319.049 kb on - strand, within ABZR86_RS01485at 319.049 kb on - strand, within ABZR86_RS01485at 319.049 kb on - strand, within ABZR86_RS01485at 319.079 kb on - strand, within ABZR86_RS01485at 319.112 kb on - strand, within ABZR86_RS01485at 319.230 kb on + strand, within ABZR86_RS01485at 319.251 kb on + strand, within ABZR86_RS01485at 319.418 kb on - strand, within ABZR86_RS01485at 319.564 kb on + strand, within ABZR86_RS01485at 319.564 kb on + strand, within ABZR86_RS01485at 319.564 kb on + strand, within ABZR86_RS01485at 319.565 kb on - strand, within ABZR86_RS01485at 319.565 kb on - strand, within ABZR86_RS01485at 319.565 kb on - strand, within ABZR86_RS01485at 319.723 kb on - strandat 319.783 kb on + strandat 319.784 kb on - strandat 319.808 kb on + strandat 319.808 kb on + strandat 319.808 kb on + strandat 319.809 kb on - strandat 319.809 kb on - strandat 319.809 kb on - strandat 319.890 kb on + strandat 319.890 kb on + strandat 319.890 kb on + strandat 319.890 kb on + strandat 319.890 kb on + strandat 319.890 kb on + strandat 319.943 kb on + strandat 319.943 kb on + strandat 319.943 kb on + strandat 319.943 kb on + strandat 319.944 kb on - strandat 319.984 kb on + strandat 319.984 kb on + strandat 319.985 kb on - strandat 319.999 kb on + strandat 319.999 kb on + strandat 320.000 kb on - strandat 320.000 kb on - strandat 320.168 kb on - strand, within ABZR86_RS01490at 320.185 kb on + strand, within ABZR86_RS01490at 320.197 kb on + strand, within ABZR86_RS01490at 320.248 kb on + strand, within ABZR86_RS01490at 320.296 kb on + strand, within ABZR86_RS01490at 320.296 kb on + strand, within ABZR86_RS01490at 320.297 kb on - strand, within ABZR86_RS01490at 320.297 kb on - strand, within ABZR86_RS01490at 320.297 kb on - strand, within ABZR86_RS01490at 320.434 kb on + strand, within ABZR86_RS01490at 320.435 kb on - strand, within ABZR86_RS01490at 320.435 kb on - strand, within ABZR86_RS01490at 320.435 kb on - strand, within ABZR86_RS01490at 320.435 kb on - strand, within ABZR86_RS01490at 320.443 kb on + strand, within ABZR86_RS01490at 320.443 kb on + strand, within ABZR86_RS01490at 320.444 kb on - strand, within ABZR86_RS01490at 320.444 kb on - strand, within ABZR86_RS01490at 320.444 kb on - strand, within ABZR86_RS01490at 320.503 kb on + strand, within ABZR86_RS01490at 320.524 kb on + strand, within ABZR86_RS01490at 320.524 kb on + strand, within ABZR86_RS01490at 320.534 kb on + strand, within ABZR86_RS01490at 320.535 kb on - strand, within ABZR86_RS01490at 320.535 kb on - strand, within ABZR86_RS01490at 320.535 kb on - strand, within ABZR86_RS01490at 320.575 kb on + strand, within ABZR86_RS01490at 320.575 kb on + strand, within ABZR86_RS01490at 320.575 kb on + strand, within ABZR86_RS01490at 320.575 kb on + strand, within ABZR86_RS01490at 320.576 kb on - strand, within ABZR86_RS01490at 320.576 kb on - strand, within ABZR86_RS01490at 320.576 kb on - strand, within ABZR86_RS01490at 320.576 kb on - strand, within ABZR86_RS01490at 320.641 kb on + strand, within ABZR86_RS01490at 320.641 kb on + strand, within ABZR86_RS01490at 320.641 kb on + strand, within ABZR86_RS01490at 320.642 kb on - strand, within ABZR86_RS01490at 320.642 kb on - strand, within ABZR86_RS01490at 320.644 kb on + strand, within ABZR86_RS01490at 320.644 kb on + strand, within ABZR86_RS01490at 320.644 kb on + strand, within ABZR86_RS01490at 320.645 kb on - strand, within ABZR86_RS01490at 320.662 kb on + strand, within ABZR86_RS01490at 320.662 kb on + strand, within ABZR86_RS01490at 320.662 kb on + strand, within ABZR86_RS01490at 320.662 kb on + strand, within ABZR86_RS01490at 320.663 kb on - strand, within ABZR86_RS01490at 320.663 kb on - strand, within ABZR86_RS01490at 320.663 kb on - strand, within ABZR86_RS01490at 320.666 kb on - strand, within ABZR86_RS01490at 320.666 kb on - strand, within ABZR86_RS01490at 320.710 kb on + strand, within ABZR86_RS01490at 320.711 kb on - strand, within ABZR86_RS01490

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.4 mg/ml
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317,244 - -0.7
317,271 + -1.1
317,272 - +0.4
317,447 + -1.0
317,447 + -1.2
317,447 + +0.1
317,447 + -0.4
317,447 + +1.7
317,448 - +0.4
317,448 - +2.4
317,448 - -0.5
317,668 + ABZR86_RS01480 0.41 -0.1
317,669 - ABZR86_RS01480 0.41 -0.6
317,764 - ABZR86_RS01480 0.61 +0.1
317,937 + +1.6
317,968 + -0.8
318,231 + -0.3
318,231 + -0.9
318,337 + +0.5
318,337 + +0.3
318,337 + -0.5
318,337 + -0.7
318,337 + -0.7
318,338 - -1.6
318,338 - -0.6
318,338 - -0.5
318,338 - +0.7
318,338 - -0.1
318,341 - +0.1
318,442 + ABZR86_RS01485 0.13 -0.4
318,443 - ABZR86_RS01485 0.13 -0.7
318,443 - ABZR86_RS01485 0.13 -0.7
318,443 - ABZR86_RS01485 0.13 -0.1
318,460 + ABZR86_RS01485 0.14 -1.6
318,460 + ABZR86_RS01485 0.14 -0.1
318,460 + ABZR86_RS01485 0.14 -0.4
318,460 + ABZR86_RS01485 0.14 -1.3
318,461 - ABZR86_RS01485 0.14 +0.3
318,461 - ABZR86_RS01485 0.14 -0.0
318,461 - ABZR86_RS01485 0.14 -0.1
318,462 + ABZR86_RS01485 0.14 -0.1
318,616 + ABZR86_RS01485 0.24 -0.4
318,616 + ABZR86_RS01485 0.24 -0.6
318,617 - ABZR86_RS01485 0.24 -0.3
318,649 + ABZR86_RS01485 0.26 -0.1
318,649 + ABZR86_RS01485 0.26 +0.1
318,649 + ABZR86_RS01485 0.26 +0.5
318,649 + ABZR86_RS01485 0.26 +0.1
318,649 + ABZR86_RS01485 0.26 +0.5
318,650 - ABZR86_RS01485 0.26 -0.7
318,650 - ABZR86_RS01485 0.26 -0.9
318,688 + ABZR86_RS01485 0.29 +0.4
318,688 + ABZR86_RS01485 0.29 +0.0
318,688 + ABZR86_RS01485 0.29 -0.8
318,689 - ABZR86_RS01485 0.29 -0.1
318,689 - ABZR86_RS01485 0.29 +0.1
318,689 - ABZR86_RS01485 0.29 +0.4
318,689 - ABZR86_RS01485 0.29 -0.9
318,689 - ABZR86_RS01485 0.29 +0.3
318,718 - ABZR86_RS01485 0.31 +0.4
318,796 + ABZR86_RS01485 0.36 +1.0
318,796 + ABZR86_RS01485 0.36 +0.5
318,797 - ABZR86_RS01485 0.36 +0.7
319,048 + ABZR86_RS01485 0.52 -0.5
319,048 + ABZR86_RS01485 0.52 +0.4
319,048 + ABZR86_RS01485 0.52 -0.3
319,049 - ABZR86_RS01485 0.52 +0.2
319,049 - ABZR86_RS01485 0.52 -2.3
319,049 - ABZR86_RS01485 0.52 +0.1
319,079 - ABZR86_RS01485 0.54 +0.8
319,112 - ABZR86_RS01485 0.56 -0.6
319,230 + ABZR86_RS01485 0.63 +0.2
319,251 + ABZR86_RS01485 0.65 +1.2
319,418 - ABZR86_RS01485 0.76 +0.3
319,564 + ABZR86_RS01485 0.85 -0.3
319,564 + ABZR86_RS01485 0.85 +0.1
319,564 + ABZR86_RS01485 0.85 +0.1
319,565 - ABZR86_RS01485 0.85 -0.0
319,565 - ABZR86_RS01485 0.85 +0.1
319,565 - ABZR86_RS01485 0.85 +0.2
319,723 - -0.9
319,783 + -0.7
319,784 - +0.0
319,808 + -0.9
319,808 + +1.7
319,808 + -0.0
319,809 - -0.2
319,809 - +0.3
319,809 - +0.8
319,890 + -1.0
319,890 + -1.1
319,890 + -0.0
319,890 + -0.6
319,890 + -0.2
319,890 + +0.4
319,943 + -0.3
319,943 + +0.1
319,943 + +0.6
319,943 + +0.2
319,944 - -0.7
319,984 + -0.8
319,984 + -0.2
319,985 - -0.2
319,999 + +0.1
319,999 + -1.1
320,000 - +0.6
320,000 - -0.5
320,168 - ABZR86_RS01490 0.15 -0.7
320,185 + ABZR86_RS01490 0.16 +0.2
320,197 + ABZR86_RS01490 0.17 +0.2
320,248 + ABZR86_RS01490 0.20 +0.0
320,296 + ABZR86_RS01490 0.23 -0.4
320,296 + ABZR86_RS01490 0.23 +0.3
320,297 - ABZR86_RS01490 0.23 +0.0
320,297 - ABZR86_RS01490 0.23 -0.1
320,297 - ABZR86_RS01490 0.23 +0.0
320,434 + ABZR86_RS01490 0.31 +0.3
320,435 - ABZR86_RS01490 0.31 +1.0
320,435 - ABZR86_RS01490 0.31 -0.5
320,435 - ABZR86_RS01490 0.31 -0.1
320,435 - ABZR86_RS01490 0.31 +1.1
320,443 + ABZR86_RS01490 0.31 +0.2
320,443 + ABZR86_RS01490 0.31 -1.2
320,444 - ABZR86_RS01490 0.31 +0.8
320,444 - ABZR86_RS01490 0.31 -0.3
320,444 - ABZR86_RS01490 0.31 +0.5
320,503 + ABZR86_RS01490 0.35 +0.7
320,524 + ABZR86_RS01490 0.36 +0.6
320,524 + ABZR86_RS01490 0.36 -1.8
320,534 + ABZR86_RS01490 0.37 -1.2
320,535 - ABZR86_RS01490 0.37 +0.1
320,535 - ABZR86_RS01490 0.37 +0.1
320,535 - ABZR86_RS01490 0.37 +0.4
320,575 + ABZR86_RS01490 0.39 -0.2
320,575 + ABZR86_RS01490 0.39 -0.2
320,575 + ABZR86_RS01490 0.39 +1.6
320,575 + ABZR86_RS01490 0.39 -1.8
320,576 - ABZR86_RS01490 0.39 -0.4
320,576 - ABZR86_RS01490 0.39 -0.6
320,576 - ABZR86_RS01490 0.39 -0.2
320,576 - ABZR86_RS01490 0.39 -1.7
320,641 + ABZR86_RS01490 0.43 +0.4
320,641 + ABZR86_RS01490 0.43 -2.0
320,641 + ABZR86_RS01490 0.43 +0.0
320,642 - ABZR86_RS01490 0.43 +0.5
320,642 - ABZR86_RS01490 0.43 -1.3
320,644 + ABZR86_RS01490 0.43 +0.0
320,644 + ABZR86_RS01490 0.43 -0.4
320,644 + ABZR86_RS01490 0.43 +1.8
320,645 - ABZR86_RS01490 0.43 +0.2
320,662 + ABZR86_RS01490 0.44 -2.8
320,662 + ABZR86_RS01490 0.44 -0.2
320,662 + ABZR86_RS01490 0.44 -0.1
320,662 + ABZR86_RS01490 0.44 +0.9
320,663 - ABZR86_RS01490 0.44 +1.5
320,663 - ABZR86_RS01490 0.44 -1.1
320,663 - ABZR86_RS01490 0.44 +0.1
320,666 - ABZR86_RS01490 0.44 +0.4
320,666 - ABZR86_RS01490 0.44 +0.2
320,710 + ABZR86_RS01490 0.47 -1.2
320,711 - ABZR86_RS01490 0.47 +0.4

Or see this region's nucleotide sequence