Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3206

Experiment: MoYLS4 with Dimethyl Sulfoxide 7.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvB and thyX are separated by 222 nucleotides DvMF_3205: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 4,037,779 to 4,038,783 ruvB DvMF_3206: thyX - FAD-dependent thymidylate synthase (RefSeq), at 4,039,006 to 4,039,737 thyX Position (kb) 4039 4040Strain fitness (log2 ratio) -2 -1 0 1at 4038.272 kb on + strand, within ruvBat 4038.638 kb on - strand, within ruvBat 4039.958 kb on + strandat 4039.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 7.5 %
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4,038,272 + ruvB DvMF_3205 0.49 -2.1
4,038,638 - ruvB DvMF_3205 0.85 -0.9
4,039,958 + -0.7
4,039,971 - -0.0

Or see this region's nucleotide sequence