Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2562

Experiment: MoYLS4 with Dimethyl Sulfoxide 7.5 %

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2560 and DvMF_2561 are separated by 117 nucleotidesDvMF_2561 and DvMF_2562 overlap by 4 nucleotidesDvMF_2562 and DvMF_R0070 are separated by 123 nucleotidesDvMF_R0070 and DvMF_2563 are separated by 203 nucleotides DvMF_2560: DvMF_2560 - transcriptional regulator, AraC family (RefSeq), at 3,236,072 to 3,237,073 _2560 DvMF_2561: DvMF_2561 - hypothetical protein (RefSeq), at 3,237,191 to 3,237,337 _2561 DvMF_2562: DvMF_2562 - ThiJ/PfpI domain protein (RefSeq), at 3,237,334 to 3,237,930 _2562 DvMF_R0070: DvMF_R0070 - tRNA-Glu (RefSeq), at 3,238,054 to 3,238,130 _R0070 DvMF_2563: DvMF_2563 - protein of unknown function DUF721 (RefSeq), at 3,238,334 to 3,238,870 _2563 Position (kb) 3237 3238Strain fitness (log2 ratio) -1 0 1at 3236.339 kb on - strand, within DvMF_2560at 3236.429 kb on + strand, within DvMF_2560at 3236.606 kb on - strand, within DvMF_2560at 3236.709 kb on + strand, within DvMF_2560at 3236.828 kb on + strand, within DvMF_2560at 3236.901 kb on + strand, within DvMF_2560at 3237.040 kb on + strandat 3237.047 kb on - strandat 3237.331 kb on + strandat 3237.590 kb on - strand, within DvMF_2562at 3237.826 kb on - strand, within DvMF_2562at 3238.020 kb on - strandat 3238.104 kb on + strand, within DvMF_R0070at 3238.353 kb on + strandat 3238.392 kb on + strand, within DvMF_2563at 3238.876 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 7.5 %
remove
3,236,339 - DvMF_2560 0.27 -0.1
3,236,429 + DvMF_2560 0.36 -0.9
3,236,606 - DvMF_2560 0.53 -0.1
3,236,709 + DvMF_2560 0.64 -0.7
3,236,828 + DvMF_2560 0.75 -0.3
3,236,901 + DvMF_2560 0.83 +0.0
3,237,040 + -0.2
3,237,047 - +0.2
3,237,331 + -0.2
3,237,590 - DvMF_2562 0.43 -0.4
3,237,826 - DvMF_2562 0.82 -0.3
3,238,020 - -0.3
3,238,104 + DvMF_R0070 0.65 +0.2
3,238,353 + -1.0
3,238,392 + DvMF_2563 0.11 -0.1
3,238,876 + -0.4

Or see this region's nucleotide sequence