Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0999

Experiment: MoYLS4 with Dimethyl Sulfoxide 7.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0998 and DvMF_0999 overlap by 14 nucleotidesDvMF_0999 and DvMF_1000 are separated by 227 nucleotides DvMF_0998: DvMF_0998 - hypothetical protein (RefSeq), at 1,212,682 to 1,213,581 _0998 DvMF_0999: DvMF_0999 - MATE efflux family protein (RefSeq), at 1,213,568 to 1,214,989 _0999 DvMF_1000: DvMF_1000 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 1,215,217 to 1,216,215 _1000 Position (kb) 1213 1214 1215Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1213.099 kb on + strand, within DvMF_0998at 1213.387 kb on - strand, within DvMF_0998at 1213.444 kb on - strand, within DvMF_0998at 1213.453 kb on + strand, within DvMF_0998at 1213.454 kb on + strand, within DvMF_0998at 1213.462 kb on - strand, within DvMF_0998at 1213.745 kb on + strand, within DvMF_0999at 1214.035 kb on - strand, within DvMF_0999at 1214.168 kb on + strand, within DvMF_0999at 1214.355 kb on - strand, within DvMF_0999at 1214.398 kb on - strand, within DvMF_0999at 1214.436 kb on - strand, within DvMF_0999at 1214.481 kb on - strand, within DvMF_0999at 1214.638 kb on + strand, within DvMF_0999at 1214.646 kb on - strand, within DvMF_0999at 1215.589 kb on + strand, within DvMF_1000at 1215.897 kb on - strand, within DvMF_1000at 1215.957 kb on + strand, within DvMF_1000at 1215.965 kb on - strand, within DvMF_1000at 1215.965 kb on - strand, within DvMF_1000

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 7.5 %
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1,213,099 + DvMF_0998 0.46 -1.2
1,213,387 - DvMF_0998 0.78 +1.0
1,213,444 - DvMF_0998 0.85 -2.0
1,213,453 + DvMF_0998 0.86 -3.6
1,213,454 + DvMF_0998 0.86 -0.5
1,213,462 - DvMF_0998 0.87 -1.8
1,213,745 + DvMF_0999 0.12 -0.4
1,214,035 - DvMF_0999 0.33 -0.2
1,214,168 + DvMF_0999 0.42 +0.3
1,214,355 - DvMF_0999 0.55 -0.1
1,214,398 - DvMF_0999 0.58 -0.3
1,214,436 - DvMF_0999 0.61 +0.1
1,214,481 - DvMF_0999 0.64 -0.5
1,214,638 + DvMF_0999 0.75 -0.2
1,214,646 - DvMF_0999 0.76 +0.3
1,215,589 + DvMF_1000 0.37 +1.6
1,215,897 - DvMF_1000 0.68 +1.3
1,215,957 + DvMF_1000 0.74 +2.4
1,215,965 - DvMF_1000 0.75 +1.4
1,215,965 - DvMF_1000 0.75 +1.3

Or see this region's nucleotide sequence