Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0998

Experiment: MoYLS4 with Dimethyl Sulfoxide 7.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgltX and DvMF_0997 are separated by 257 nucleotidesDvMF_0997 and DvMF_0998 are separated by 314 nucleotidesDvMF_0998 and DvMF_0999 overlap by 14 nucleotides DvMF_0996: gltX - glutamyl-tRNA synthetase (RefSeq), at 1,210,482 to 1,211,876 gltX DvMF_0997: DvMF_0997 - nitrogen-fixing NifU domain protein (RefSeq), at 1,212,134 to 1,212,367 _0997 DvMF_0998: DvMF_0998 - hypothetical protein (RefSeq), at 1,212,682 to 1,213,581 _0998 DvMF_0999: DvMF_0999 - MATE efflux family protein (RefSeq), at 1,213,568 to 1,214,989 _0999 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1at 1211.960 kb on + strandat 1211.968 kb on - strandat 1212.149 kb on - strandat 1212.219 kb on + strand, within DvMF_0997at 1212.222 kb on - strand, within DvMF_0997at 1213.099 kb on + strand, within DvMF_0998at 1213.387 kb on - strand, within DvMF_0998at 1213.444 kb on - strand, within DvMF_0998at 1213.453 kb on + strand, within DvMF_0998at 1213.454 kb on + strand, within DvMF_0998at 1213.462 kb on - strand, within DvMF_0998at 1213.745 kb on + strand, within DvMF_0999at 1214.035 kb on - strand, within DvMF_0999at 1214.168 kb on + strand, within DvMF_0999at 1214.355 kb on - strand, within DvMF_0999at 1214.398 kb on - strand, within DvMF_0999at 1214.436 kb on - strand, within DvMF_0999at 1214.481 kb on - strand, within DvMF_0999

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 7.5 %
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1,211,960 + -0.3
1,211,968 - -0.5
1,212,149 - -0.2
1,212,219 + DvMF_0997 0.36 -0.3
1,212,222 - DvMF_0997 0.38 -0.8
1,213,099 + DvMF_0998 0.46 -1.2
1,213,387 - DvMF_0998 0.78 +1.0
1,213,444 - DvMF_0998 0.85 -2.0
1,213,453 + DvMF_0998 0.86 -3.6
1,213,454 + DvMF_0998 0.86 -0.5
1,213,462 - DvMF_0998 0.87 -1.8
1,213,745 + DvMF_0999 0.12 -0.4
1,214,035 - DvMF_0999 0.33 -0.2
1,214,168 + DvMF_0999 0.42 +0.3
1,214,355 - DvMF_0999 0.55 -0.1
1,214,398 - DvMF_0999 0.58 -0.3
1,214,436 - DvMF_0999 0.61 +0.1
1,214,481 - DvMF_0999 0.64 -0.5

Or see this region's nucleotide sequence