Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0609

Experiment: MoYLS4 with Dimethyl Sulfoxide 7.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0608 and DvMF_0609 are separated by 4 nucleotidesDvMF_0609 and DvMF_0610 overlap by 4 nucleotides DvMF_0608: DvMF_0608 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 720,022 to 721,605 _0608 DvMF_0609: DvMF_0609 - Indolepyruvate ferredoxin oxidoreductase (RefSeq), at 721,610 to 722,215 _0609 DvMF_0610: DvMF_0610 - indolepyruvate ferredoxin oxidoreductase, alpha subunit (RefSeq), at 722,212 to 724,101 _0610 Position (kb) 721 722 723Strain fitness (log2 ratio) -2 -1 0 1at 721.001 kb on - strand, within DvMF_0608at 721.160 kb on - strand, within DvMF_0608at 721.185 kb on - strand, within DvMF_0608at 721.920 kb on + strand, within DvMF_0609at 722.002 kb on - strand, within DvMF_0609at 722.128 kb on - strand, within DvMF_0609at 722.235 kb on + strandat 722.332 kb on + strandat 722.332 kb on + strandat 722.368 kb on - strandat 722.403 kb on + strand, within DvMF_0610at 722.541 kb on + strand, within DvMF_0610at 722.567 kb on + strand, within DvMF_0610at 722.598 kb on - strand, within DvMF_0610at 722.607 kb on - strand, within DvMF_0610at 722.701 kb on - strand, within DvMF_0610at 722.764 kb on - strand, within DvMF_0610at 722.845 kb on - strand, within DvMF_0610at 722.883 kb on - strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.912 kb on + strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.920 kb on - strand, within DvMF_0610at 722.950 kb on - strand, within DvMF_0610

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Dimethyl Sulfoxide 7.5 %
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721,001 - DvMF_0608 0.62 -1.6
721,160 - DvMF_0608 0.72 -1.8
721,185 - DvMF_0608 0.73 -1.7
721,920 + DvMF_0609 0.51 -1.7
722,002 - DvMF_0609 0.65 -0.7
722,128 - DvMF_0609 0.85 -1.6
722,235 + -0.7
722,332 + -0.1
722,332 + -0.6
722,368 - -0.0
722,403 + DvMF_0610 0.10 -1.1
722,541 + DvMF_0610 0.17 -1.4
722,567 + DvMF_0610 0.19 -0.3
722,598 - DvMF_0610 0.20 -0.6
722,607 - DvMF_0610 0.21 -0.8
722,701 - DvMF_0610 0.26 -0.9
722,764 - DvMF_0610 0.29 +0.4
722,845 - DvMF_0610 0.33 -0.7
722,883 - DvMF_0610 0.36 -0.9
722,912 + DvMF_0610 0.37 -0.7
722,912 + DvMF_0610 0.37 -1.6
722,912 + DvMF_0610 0.37 +0.0
722,912 + DvMF_0610 0.37 -1.3
722,912 + DvMF_0610 0.37 -0.8
722,912 + DvMF_0610 0.37 -2.5
722,912 + DvMF_0610 0.37 -1.6
722,920 - DvMF_0610 0.37 -1.0
722,920 - DvMF_0610 0.37 -0.3
722,920 - DvMF_0610 0.37 -0.5
722,920 - DvMF_0610 0.37 -0.7
722,920 - DvMF_0610 0.37 -0.7
722,920 - DvMF_0610 0.37 +0.3
722,920 - DvMF_0610 0.37 -0.9
722,920 - DvMF_0610 0.37 -0.8
722,920 - DvMF_0610 0.37 -0.7
722,950 - DvMF_0610 0.39 -1.0

Or see this region's nucleotide sequence