Experiment: Chloramphenicol 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2 and Pf6N2E2_3 are separated by 273 nucleotides Pf6N2E2_3 and Pf6N2E2_4 overlap by 1 nucleotides
Pf6N2E2_2 - FIG057993:Thioesterase involved in non-ribosomal peptide biosynthesis, at 1,006 to 1,740
_2
Pf6N2E2_3 - Non-ribosomal peptide synthetase modules, pyoverdine, at 2,014 to 14,454
_3
Pf6N2E2_4 - Non-ribosomal peptide synthetase modules, pyoverdine @ Siderophore biosynthesis non-ribosomal peptide synthetase modules, at 14,454 to 20,954
_4
Position (kb) 2
3
4
5
6
7
8
9
10
11
12
13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 1.037 kb on - strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.060 kb on + strand at 1.061 kb on - strand at 1.349 kb on - strand, within Pf6N2E2_2 at 1.430 kb on + strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.431 kb on - strand, within Pf6N2E2_2 at 1.960 kb on - strand at 2.173 kb on + strand at 2.227 kb on + strand at 2.228 kb on - strand at 2.919 kb on + strand at 2.919 kb on + strand at 2.945 kb on - strand at 3.184 kb on + strand at 3.184 kb on + strand at 3.185 kb on - strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.208 kb on + strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.209 kb on - strand at 3.326 kb on - strand, within Pf6N2E2_3 at 3.326 kb on - strand, within Pf6N2E2_3 at 3.361 kb on + strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.362 kb on - strand, within Pf6N2E2_3 at 3.552 kb on - strand, within Pf6N2E2_3 at 3.628 kb on + strand, within Pf6N2E2_3 at 3.628 kb on + strand, within Pf6N2E2_3 at 3.775 kb on + strand, within Pf6N2E2_3 at 3.776 kb on - strand, within Pf6N2E2_3 at 3.985 kb on + strand, within Pf6N2E2_3 at 3.985 kb on + strand, within Pf6N2E2_3 at 4.078 kb on + strand, within Pf6N2E2_3 at 4.079 kb on - strand, within Pf6N2E2_3 at 4.079 kb on - strand, within Pf6N2E2_3 at 4.321 kb on + strand, within Pf6N2E2_3 at 4.426 kb on + strand, within Pf6N2E2_3 at 4.427 kb on - strand, within Pf6N2E2_3 at 4.427 kb on - strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.477 kb on + strand, within Pf6N2E2_3 at 4.542 kb on + strand, within Pf6N2E2_3 at 4.542 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.546 kb on + strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.547 kb on - strand, within Pf6N2E2_3 at 4.631 kb on - strand, within Pf6N2E2_3 at 4.702 kb on + strand, within Pf6N2E2_3 at 4.775 kb on + strand, within Pf6N2E2_3 at 4.775 kb on + strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.776 kb on - strand, within Pf6N2E2_3 at 4.999 kb on + strand, within Pf6N2E2_3 at 5.000 kb on - strand, within Pf6N2E2_3 at 5.166 kb on - strand, within Pf6N2E2_3 at 5.306 kb on + strand, within Pf6N2E2_3 at 5.306 kb on + strand, within Pf6N2E2_3 at 5.744 kb on + strand, within Pf6N2E2_3 at 5.745 kb on - strand, within Pf6N2E2_3 at 5.870 kb on - strand, within Pf6N2E2_3 at 6.333 kb on - strand, within Pf6N2E2_3 at 6.418 kb on + strand, within Pf6N2E2_3 at 6.550 kb on + strand, within Pf6N2E2_3 at 6.550 kb on + strand, within Pf6N2E2_3 at 6.551 kb on - strand, within Pf6N2E2_3 at 6.551 kb on - strand, within Pf6N2E2_3 at 6.631 kb on + strand, within Pf6N2E2_3 at 6.632 kb on - strand, within Pf6N2E2_3 at 6.632 kb on - strand, within Pf6N2E2_3 at 6.775 kb on + strand, within Pf6N2E2_3 at 6.820 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.841 kb on + strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.842 kb on - strand, within Pf6N2E2_3 at 6.854 kb on + strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 6.855 kb on - strand, within Pf6N2E2_3 at 7.006 kb on + strand, within Pf6N2E2_3 at 7.006 kb on + strand, within Pf6N2E2_3 at 7.423 kb on + strand, within Pf6N2E2_3 at 7.423 kb on + strand, within Pf6N2E2_3 at 7.424 kb on - strand, within Pf6N2E2_3 at 7.424 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.348 kb on - strand, within Pf6N2E2_3 at 8.389 kb on + strand, within Pf6N2E2_3 at 8.390 kb on - strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.554 kb on + strand, within Pf6N2E2_3 at 8.555 kb on - strand, within Pf6N2E2_3 at 8.563 kb on + strand, within Pf6N2E2_3 at 8.564 kb on - strand, within Pf6N2E2_3 at 8.791 kb on + strand, within Pf6N2E2_3 at 8.791 kb on + strand, within Pf6N2E2_3 at 8.792 kb on - strand, within Pf6N2E2_3 at 8.902 kb on + strand, within Pf6N2E2_3 at 8.902 kb on + strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 8.903 kb on - strand, within Pf6N2E2_3 at 9.059 kb on - strand, within Pf6N2E2_3 at 9.152 kb on - strand, within Pf6N2E2_3 at 9.152 kb on - strand, within Pf6N2E2_3 at 9.547 kb on + strand, within Pf6N2E2_3 at 9.547 kb on + strand, within Pf6N2E2_3 at 9.644 kb on - strand, within Pf6N2E2_3 at 9.644 kb on - strand, within Pf6N2E2_3 at 10.081 kb on - strand, within Pf6N2E2_3 at 10.439 kb on - strand, within Pf6N2E2_3 at 10.579 kb on - strand, within Pf6N2E2_3 at 10.957 kb on + strand, within Pf6N2E2_3 at 10.958 kb on - strand, within Pf6N2E2_3 at 11.170 kb on + strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.171 kb on - strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.174 kb on + strand, within Pf6N2E2_3 at 11.175 kb on - strand, within Pf6N2E2_3 at 11.175 kb on - strand, within Pf6N2E2_3 at 11.314 kb on + strand, within Pf6N2E2_3 at 11.314 kb on + strand, within Pf6N2E2_3 at 11.353 kb on - strand, within Pf6N2E2_3 at 11.380 kb on + strand, within Pf6N2E2_3 at 11.380 kb on + strand, within Pf6N2E2_3 at 11.577 kb on + strand, within Pf6N2E2_3 at 11.767 kb on + strand, within Pf6N2E2_3 at 12.065 kb on - strand, within Pf6N2E2_3 at 12.472 kb on + strand, within Pf6N2E2_3 at 12.777 kb on + strand, within Pf6N2E2_3 at 12.778 kb on - strand, within Pf6N2E2_3 at 12.928 kb on + strand, within Pf6N2E2_3 at 12.928 kb on + strand, within Pf6N2E2_3 at 12.929 kb on - strand, within Pf6N2E2_3 at 13.093 kb on + strand, within Pf6N2E2_3 at 13.102 kb on + strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.103 kb on - strand, within Pf6N2E2_3 at 13.190 kb on - strand, within Pf6N2E2_3 at 13.469 kb on - strand at 13.492 kb on + strand at 13.492 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.526 kb on - strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.597 kb on + strand at 13.598 kb on - strand at 13.651 kb on + strand at 13.652 kb on - strand at 13.753 kb on + strand at 14.036 kb on + strand at 14.045 kb on - strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.493 kb on - strand at 14.613 kb on + strand at 14.613 kb on + strand at 14.613 kb on + strand at 15.055 kb on - strand at 15.057 kb on + strand at 15.058 kb on - strand at 15.111 kb on + strand, within Pf6N2E2_4
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml remove 1,037 - -0.0 1,060 + -0.5 1,060 + -0.2 1,060 + +0.0 1,061 - -0.0 1,349 - Pf6N2E2_2 0.47 +0.9 1,430 + Pf6N2E2_2 0.58 +0.3 1,431 - Pf6N2E2_2 0.58 -0.6 1,431 - Pf6N2E2_2 0.58 +0.1 1,431 - Pf6N2E2_2 0.58 +0.0 1,960 - -0.1 2,173 + -0.7 2,227 + +0.7 2,228 - +1.7 2,919 + +0.1 2,919 + +0.4 2,945 - +0.2 3,184 + -1.0 3,184 + -0.3 3,185 - +0.5 3,208 + -1.0 3,208 + -1.6 3,208 + -1.3 3,208 + -0.5 3,209 - -0.7 3,209 - -0.3 3,209 - -0.2 3,209 - +0.1 3,209 - +0.3 3,326 - Pf6N2E2_3 0.11 +0.2 3,326 - Pf6N2E2_3 0.11 -2.6 3,361 + Pf6N2E2_3 0.11 +0.8 3,362 - Pf6N2E2_3 0.11 -0.6 3,362 - Pf6N2E2_3 0.11 +0.2 3,362 - Pf6N2E2_3 0.11 +0.1 3,552 - Pf6N2E2_3 0.12 +0.2 3,628 + Pf6N2E2_3 0.13 +2.0 3,628 + Pf6N2E2_3 0.13 +0.6 3,775 + Pf6N2E2_3 0.14 -0.1 3,776 - Pf6N2E2_3 0.14 -2.8 3,985 + Pf6N2E2_3 0.16 +0.2 3,985 + Pf6N2E2_3 0.16 -0.7 4,078 + Pf6N2E2_3 0.17 +1.0 4,079 - Pf6N2E2_3 0.17 -0.6 4,079 - Pf6N2E2_3 0.17 -0.1 4,321 + Pf6N2E2_3 0.19 -0.4 4,426 + Pf6N2E2_3 0.19 +0.3 4,427 - Pf6N2E2_3 0.19 +0.5 4,427 - Pf6N2E2_3 0.19 -0.2 4,477 + Pf6N2E2_3 0.20 -1.0 4,477 + Pf6N2E2_3 0.20 -0.4 4,477 + Pf6N2E2_3 0.20 -0.0 4,477 + Pf6N2E2_3 0.20 -0.2 4,542 + Pf6N2E2_3 0.20 -0.1 4,542 + Pf6N2E2_3 0.20 +0.6 4,546 + Pf6N2E2_3 0.20 +1.3 4,546 + Pf6N2E2_3 0.20 +0.1 4,546 + Pf6N2E2_3 0.20 +0.5 4,547 - Pf6N2E2_3 0.20 -0.6 4,547 - Pf6N2E2_3 0.20 -0.1 4,547 - Pf6N2E2_3 0.20 +0.3 4,547 - Pf6N2E2_3 0.20 +0.2 4,547 - Pf6N2E2_3 0.20 +0.9 4,547 - Pf6N2E2_3 0.20 -0.6 4,547 - Pf6N2E2_3 0.20 +0.0 4,547 - Pf6N2E2_3 0.20 -0.7 4,547 - Pf6N2E2_3 0.20 -0.1 4,547 - Pf6N2E2_3 0.20 +1.2 4,631 - Pf6N2E2_3 0.21 -0.0 4,702 + Pf6N2E2_3 0.22 -0.9 4,775 + Pf6N2E2_3 0.22 -0.2 4,775 + Pf6N2E2_3 0.22 +2.0 4,776 - Pf6N2E2_3 0.22 -1.8 4,776 - Pf6N2E2_3 0.22 -0.0 4,776 - Pf6N2E2_3 0.22 +0.1 4,999 + Pf6N2E2_3 0.24 -0.3 5,000 - Pf6N2E2_3 0.24 -1.5 5,166 - Pf6N2E2_3 0.25 +0.9 5,306 + Pf6N2E2_3 0.26 -0.3 5,306 + Pf6N2E2_3 0.26 -0.4 5,744 + Pf6N2E2_3 0.30 +0.3 5,745 - Pf6N2E2_3 0.30 -0.2 5,870 - Pf6N2E2_3 0.31 +0.0 6,333 - Pf6N2E2_3 0.35 +0.4 6,418 + Pf6N2E2_3 0.35 +1.1 6,550 + Pf6N2E2_3 0.36 +0.1 6,550 + Pf6N2E2_3 0.36 +0.1 6,551 - Pf6N2E2_3 0.36 +1.2 6,551 - Pf6N2E2_3 0.36 +0.4 6,631 + Pf6N2E2_3 0.37 -0.3 6,632 - Pf6N2E2_3 0.37 +0.4 6,632 - Pf6N2E2_3 0.37 +0.9 6,775 + Pf6N2E2_3 0.38 -0.5 6,820 + Pf6N2E2_3 0.39 -0.4 6,841 + Pf6N2E2_3 0.39 -0.5 6,841 + Pf6N2E2_3 0.39 -0.1 6,841 + Pf6N2E2_3 0.39 +0.7 6,841 + Pf6N2E2_3 0.39 +0.8 6,842 - Pf6N2E2_3 0.39 +0.6 6,842 - Pf6N2E2_3 0.39 -0.5 6,842 - Pf6N2E2_3 0.39 +0.7 6,842 - Pf6N2E2_3 0.39 +0.8 6,842 - Pf6N2E2_3 0.39 +0.8 6,854 + Pf6N2E2_3 0.39 +0.8 6,855 - Pf6N2E2_3 0.39 +1.0 6,855 - Pf6N2E2_3 0.39 +0.4 6,855 - Pf6N2E2_3 0.39 -0.2 6,855 - Pf6N2E2_3 0.39 +0.2 7,006 + Pf6N2E2_3 0.40 +0.2 7,006 + Pf6N2E2_3 0.40 +0.4 7,423 + Pf6N2E2_3 0.43 -0.5 7,423 + Pf6N2E2_3 0.43 +0.3 7,424 - Pf6N2E2_3 0.43 +0.4 7,424 - Pf6N2E2_3 0.43 +1.1 8,348 - Pf6N2E2_3 0.51 -0.3 8,348 - Pf6N2E2_3 0.51 +6.5 8,348 - Pf6N2E2_3 0.51 +0.0 8,389 + Pf6N2E2_3 0.51 +1.2 8,390 - Pf6N2E2_3 0.51 -0.2 8,554 + Pf6N2E2_3 0.53 +0.2 8,554 + Pf6N2E2_3 0.53 +0.6 8,554 + Pf6N2E2_3 0.53 -0.7 8,555 - Pf6N2E2_3 0.53 +0.6 8,563 + Pf6N2E2_3 0.53 +0.1 8,564 - Pf6N2E2_3 0.53 +1.9 8,791 + Pf6N2E2_3 0.54 +0.6 8,791 + Pf6N2E2_3 0.54 -0.8 8,792 - Pf6N2E2_3 0.54 -0.3 8,902 + Pf6N2E2_3 0.55 +0.6 8,902 + Pf6N2E2_3 0.55 -0.8 8,903 - Pf6N2E2_3 0.55 +0.3 8,903 - Pf6N2E2_3 0.55 -0.3 8,903 - Pf6N2E2_3 0.55 -0.1 9,059 - Pf6N2E2_3 0.57 -0.3 9,152 - Pf6N2E2_3 0.57 +0.3 9,152 - Pf6N2E2_3 0.57 -0.2 9,547 + Pf6N2E2_3 0.61 -0.0 9,547 + Pf6N2E2_3 0.61 +0.3 9,644 - Pf6N2E2_3 0.61 -0.4 9,644 - Pf6N2E2_3 0.61 +0.2 10,081 - Pf6N2E2_3 0.65 +0.8 10,439 - Pf6N2E2_3 0.68 +0.7 10,579 - Pf6N2E2_3 0.69 +0.4 10,957 + Pf6N2E2_3 0.72 -0.5 10,958 - Pf6N2E2_3 0.72 +0.6 11,170 + Pf6N2E2_3 0.74 +1.3 11,171 - Pf6N2E2_3 0.74 -0.6 11,171 - Pf6N2E2_3 0.74 -0.9 11,171 - Pf6N2E2_3 0.74 +1.1 11,171 - Pf6N2E2_3 0.74 -0.7 11,171 - Pf6N2E2_3 0.74 -1.3 11,171 - Pf6N2E2_3 0.74 +1.6 11,171 - Pf6N2E2_3 0.74 +0.1 11,171 - Pf6N2E2_3 0.74 +0.5 11,174 + Pf6N2E2_3 0.74 -0.9 11,174 + Pf6N2E2_3 0.74 +0.9 11,174 + Pf6N2E2_3 0.74 +0.5 11,175 - Pf6N2E2_3 0.74 +1.1 11,175 - Pf6N2E2_3 0.74 -0.2 11,314 + Pf6N2E2_3 0.75 +0.8 11,314 + Pf6N2E2_3 0.75 -0.5 11,353 - Pf6N2E2_3 0.75 +2.1 11,380 + Pf6N2E2_3 0.75 -0.7 11,380 + Pf6N2E2_3 0.75 +0.4 11,577 + Pf6N2E2_3 0.77 +0.6 11,767 + Pf6N2E2_3 0.78 +1.0 12,065 - Pf6N2E2_3 0.81 -1.7 12,472 + Pf6N2E2_3 0.84 -0.0 12,777 + Pf6N2E2_3 0.87 +0.0 12,778 - Pf6N2E2_3 0.87 +0.4 12,928 + Pf6N2E2_3 0.88 -0.7 12,928 + Pf6N2E2_3 0.88 +0.0 12,929 - Pf6N2E2_3 0.88 +0.7 13,093 + Pf6N2E2_3 0.89 +0.3 13,102 + Pf6N2E2_3 0.89 +0.5 13,103 - Pf6N2E2_3 0.89 -0.3 13,103 - Pf6N2E2_3 0.89 +0.3 13,103 - Pf6N2E2_3 0.89 -0.9 13,103 - Pf6N2E2_3 0.89 +0.8 13,190 - Pf6N2E2_3 0.90 +0.5 13,469 - -0.9 13,492 + +0.8 13,492 + +0.2 13,525 + +0.0 13,525 + -1.5 13,525 + -0.1 13,526 - +0.8 13,526 - -0.1 13,526 - +0.7 13,597 + +1.3 13,597 + +0.2 13,597 + -0.2 13,598 - -1.5 13,651 + -0.7 13,652 - +0.3 13,753 + -0.1 14,036 + -0.5 14,045 - +1.3 14,459 + -1.8 14,460 - -1.1 14,493 - -0.0 14,613 + +1.2 14,613 + -0.5 14,613 + +0.1 15,055 - -1.1 15,057 + +0.1 15,058 - -0.1 15,111 + Pf6N2E2_4 0.10 -0.0
Or see this region's nucleotide sequence