Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1817

Experiment: Chloramphenicol 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1816 and Pf6N2E2_1817 overlap by 4 nucleotidesPf6N2E2_1817 and Pf6N2E2_1818 are separated by 46 nucleotidesPf6N2E2_1818 and Pf6N2E2_1819 are separated by 137 nucleotides Pf6N2E2_1816 - Pyruvate dehydrogenase E1 component (EC 1.2.4.1), at 2,148,793 to 2,151,489 _1816 Pf6N2E2_1817 - hypothetical protein, at 2,151,486 to 2,151,908 _1817 Pf6N2E2_1818 - hypothetical protein, at 2,151,955 to 2,152,413 _1818 Pf6N2E2_1819 - 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7), at 2,152,551 to 2,153,567 _1819 Position (kb) 2151 2152Strain fitness (log2 ratio) -2 -1 0 1 2at 2150.850 kb on - strand, within Pf6N2E2_1816at 2150.850 kb on - strand, within Pf6N2E2_1816at 2151.030 kb on - strand, within Pf6N2E2_1816at 2151.030 kb on - strand, within Pf6N2E2_1816at 2151.056 kb on + strand, within Pf6N2E2_1816at 2151.057 kb on - strand, within Pf6N2E2_1816at 2151.057 kb on - strand, within Pf6N2E2_1816at 2151.143 kb on + strandat 2151.144 kb on - strand, within Pf6N2E2_1816at 2151.144 kb on - strand, within Pf6N2E2_1816at 2151.288 kb on + strandat 2151.297 kb on - strandat 2151.297 kb on - strandat 2151.489 kb on + strandat 2151.490 kb on - strandat 2151.559 kb on - strand, within Pf6N2E2_1817at 2151.559 kb on - strand, within Pf6N2E2_1817at 2151.559 kb on - strand, within Pf6N2E2_1817at 2151.568 kb on - strand, within Pf6N2E2_1817at 2151.845 kb on + strand, within Pf6N2E2_1817at 2151.909 kb on - strandat 2152.181 kb on + strand, within Pf6N2E2_1818at 2152.182 kb on - strand, within Pf6N2E2_1818at 2152.271 kb on + strand, within Pf6N2E2_1818at 2152.294 kb on + strand, within Pf6N2E2_1818at 2152.295 kb on - strand, within Pf6N2E2_1818at 2152.322 kb on + strand, within Pf6N2E2_1818at 2152.322 kb on + strand, within Pf6N2E2_1818at 2152.322 kb on + strand, within Pf6N2E2_1818at 2152.323 kb on - strand, within Pf6N2E2_1818at 2152.577 kb on - strandat 2152.687 kb on + strand, within Pf6N2E2_1819at 2152.845 kb on - strand, within Pf6N2E2_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.008 mg/ml
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2,150,850 - Pf6N2E2_1816 0.76 -2.3
2,150,850 - Pf6N2E2_1816 0.76 -0.0
2,151,030 - Pf6N2E2_1816 0.83 -0.8
2,151,030 - Pf6N2E2_1816 0.83 -0.1
2,151,056 + Pf6N2E2_1816 0.84 +0.6
2,151,057 - Pf6N2E2_1816 0.84 +0.3
2,151,057 - Pf6N2E2_1816 0.84 -0.5
2,151,143 + +2.0
2,151,144 - Pf6N2E2_1816 0.87 -0.2
2,151,144 - Pf6N2E2_1816 0.87 -0.1
2,151,288 + +0.8
2,151,297 - +0.6
2,151,297 - -0.6
2,151,489 + +0.9
2,151,490 - -1.1
2,151,559 - Pf6N2E2_1817 0.17 -0.7
2,151,559 - Pf6N2E2_1817 0.17 -1.3
2,151,559 - Pf6N2E2_1817 0.17 +0.3
2,151,568 - Pf6N2E2_1817 0.19 -0.7
2,151,845 + Pf6N2E2_1817 0.85 -0.6
2,151,909 - -0.2
2,152,181 + Pf6N2E2_1818 0.49 +0.2
2,152,182 - Pf6N2E2_1818 0.49 -0.2
2,152,271 + Pf6N2E2_1818 0.69 -0.5
2,152,294 + Pf6N2E2_1818 0.74 +0.8
2,152,295 - Pf6N2E2_1818 0.74 -0.2
2,152,322 + Pf6N2E2_1818 0.80 +0.0
2,152,322 + Pf6N2E2_1818 0.80 +0.5
2,152,322 + Pf6N2E2_1818 0.80 +0.8
2,152,323 - Pf6N2E2_1818 0.80 +0.5
2,152,577 - +1.4
2,152,687 + Pf6N2E2_1819 0.13 -0.7
2,152,845 - Pf6N2E2_1819 0.29 +0.7

Or see this region's nucleotide sequence