Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17560

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,838,025	+		LRK54_RS17555	0.69	-1.8
3,838,212	+		LRK54_RS17555	0.74	-1.4
3,838,212	+		LRK54_RS17555	0.74	-2.4
3,838,213	-		LRK54_RS17555	0.75	-0.4
3,838,213	-		LRK54_RS17555	0.75	-1.4
3,838,213	-		LRK54_RS17555	0.75	-1.2
3,838,213	-		LRK54_RS17555	0.75	+0.8
3,838,289	+		LRK54_RS17555	0.77	-1.7
3,838,290	-		LRK54_RS17555	0.77	-1.4
3,838,290	-		LRK54_RS17555	0.77	-2.2
3,838,290	-		LRK54_RS17555	0.77	-0.8
3,838,296	+		LRK54_RS17555	0.77	-0.2
3,838,296	+		LRK54_RS17555	0.77	-0.5
3,838,297	-		LRK54_RS17555	0.77	-2.0
3,838,297	-		LRK54_RS17555	0.77	-2.3
3,838,297	-		LRK54_RS17555	0.77	-0.4
3,838,585	-		LRK54_RS17555	0.86	-1.7
3,838,701	+				-1.0
3,838,701	+				-0.6
3,838,701	+				-1.2
3,838,701	+				-1.5
3,838,701	+				-0.4
3,838,701	+				-2.4
3,838,701	+				-1.0
3,838,701	+				-1.1
3,838,701	+				-1.0
3,838,701	+				-1.8
3,838,701	+				-1.4
3,838,701	+				+0.8
3,838,701	+				-1.7
3,838,701	+				-1.2
3,838,701	+				-2.2
3,838,701	+				-1.0
3,838,701	+				-1.3
3,838,701	+				+0.5
3,838,701	+				-2.7
3,838,701	+				-1.1
3,838,701	+				-0.8
3,838,702	-				-1.2
3,838,702	-				-1.9
3,838,702	-				-1.9
3,838,702	-				+0.8
3,838,702	-				-0.4
3,838,702	-				-0.2
3,838,702	-				-3.0
3,838,702	-				-1.9
3,838,702	-				-0.7
3,838,702	-				-2.1
3,838,702	-				-2.8
3,838,702	-				-1.7
3,838,702	-				-1.2
3,838,702	-				-0.1
3,838,725	+				-1.2
3,838,725	+				-1.6
3,838,725	+				-1.5
3,838,725	+				+0.2
3,838,726	-				-0.7
3,838,726	-				-0.8
3,838,737	+				-0.3
3,838,737	+				-0.5
3,838,737	+				-0.8
3,838,737	+				-1.0
3,838,737	+				-3.0
3,838,737	+				-1.6
3,838,737	+				-1.1
3,838,737	+				-0.8
3,838,737	+				-1.0
3,838,737	+				-2.0
3,838,737	+				-0.5
3,838,737	+				-1.6
3,838,737	+				+0.2
3,838,737	+				-2.0
3,838,737	+				-1.6
3,838,737	+				-1.1
3,838,737	+				-1.1
3,838,737	+				-1.7
3,838,738	-				-1.1
3,838,738	-				-0.5
3,838,738	-				-1.3
3,838,738	-				-1.9
3,838,738	-				-1.1
3,838,738	-				+0.8
3,838,738	-				-1.4
3,838,738	-				-1.8
3,838,738	-				-1.5
3,838,738	-				-1.9
3,838,738	-				-1.8
3,838,738	-				-2.0
3,838,738	-				-1.3
3,838,738	-				-1.4
3,838,738	-				-2.3
3,838,738	-				-2.3
3,838,738	-				-0.9
3,838,738	-				-0.4
3,838,738	-				-2.5
3,838,738	-				-2.4
3,838,738	-				-1.2
3,838,738	-				-0.2
3,838,738	-				-1.9
3,838,863	+				-0.5
3,838,863	+				-1.1
3,838,863	+				-1.1
3,838,863	+				-1.8
3,838,863	+				-0.5
3,838,863	+				+0.1
3,838,863	+				-2.9
3,838,863	+				-1.5
3,838,864	-				-1.7
3,838,864	-				-2.4
3,838,864	-				-0.6
3,838,977	+				-2.6
3,838,977	+				-1.2
3,838,977	+				-0.8
3,838,977	+				-0.8
3,838,977	+				-2.0
3,838,977	+				-0.2
3,838,978	-				-1.4
3,838,978	-				-1.2
3,839,075	+				-1.9
3,839,075	+				-2.2
3,839,075	+				-2.0
3,839,075	+				-2.2
3,839,075	+				-2.0
3,839,075	+				-3.3
3,839,075	+				-1.2
3,839,075	+				-1.8
3,839,075	+				-1.3
3,839,076	-				-2.0
3,839,076	-				-0.2
3,839,076	-				-1.5
3,839,076	-				-1.2
3,839,076	-				-0.2
3,839,076	-				-1.8
3,839,076	-				-1.9
3,839,076	-				-1.4
3,839,076	-				-1.7
3,839,076	-				-0.2
3,839,643	-		LRK54_RS17560	0.58	-2.3
3,839,693	+		LRK54_RS17560	0.62	-0.8
3,839,694	-		LRK54_RS17560	0.62	-0.5
3,839,694	-		LRK54_RS17560	0.62	-0.5
3,839,897	+		LRK54_RS17560	0.81	-0.8
3,839,897	+		LRK54_RS17560	0.81	-1.4
3,839,897	+		LRK54_RS17560	0.81	-0.3
3,839,897	+		LRK54_RS17560	0.81	-0.5
3,839,897	+		LRK54_RS17560	0.81	-1.0
3,839,898	-		LRK54_RS17560	0.81	-1.5
3,839,898	-		LRK54_RS17560	0.81	-0.4
3,839,898	-		LRK54_RS17560	0.81	-1.9
3,839,898	-		LRK54_RS17560	0.81	-1.0
3,839,898	-		LRK54_RS17560	0.81	-0.5
3,839,898	-		LRK54_RS17560	0.81	-1.8
3,839,898	-		LRK54_RS17560	0.81	-0.8
3,839,898	-		LRK54_RS17560	0.81	-1.7
3,840,184	+				-1.5
3,840,184	+				-4.1
3,840,184	+				-0.9
3,840,185	-				-1.2
3,840,185	-				+0.5
3,840,185	-				-1.9
3,840,261	+		LRK54_RS17565	0.13	-1.2
3,840,261	+		LRK54_RS17565	0.13	-0.9
3,840,261	+		LRK54_RS17565	0.13	-1.1
3,840,261	+		LRK54_RS17565	0.13	-2.0
3,840,261	+		LRK54_RS17565	0.13	-2.1
3,840,261	+		LRK54_RS17565	0.13	-2.4
3,840,261	+		LRK54_RS17565	0.13	-1.2
3,840,261	+		LRK54_RS17565	0.13	-1.8
3,840,261	+		LRK54_RS17565	0.13	-1.0
3,840,262	-		LRK54_RS17565	0.13	-0.6
3,840,262	-		LRK54_RS17565	0.13	-2.5
3,840,262	-		LRK54_RS17565	0.13	-0.7
3,840,262	-		LRK54_RS17565	0.13	-0.2
3,840,262	-		LRK54_RS17565	0.13	-0.4
3,840,262	-		LRK54_RS17565	0.13	-1.9
3,840,262	-		LRK54_RS17565	0.13	+0.2
3,840,262	-		LRK54_RS17565	0.13	-0.6
3,840,262	-		LRK54_RS17565	0.13	-1.8
3,840,262	-		LRK54_RS17565	0.13	-0.1
3,840,268	+		LRK54_RS17565	0.14	-0.5
3,840,268	+		LRK54_RS17565	0.14	-1.2
3,840,269	-		LRK54_RS17565	0.14	-0.5
3,840,269	-		LRK54_RS17565	0.14	-1.1
3,840,269	-		LRK54_RS17565	0.14	+0.0
3,840,309	+		LRK54_RS17565	0.18	-2.5
3,840,309	+		LRK54_RS17565	0.18	-0.2
3,840,309	+		LRK54_RS17565	0.18	-1.1
3,840,309	+		LRK54_RS17565	0.18	+0.0
3,840,309	+		LRK54_RS17565	0.18	+0.2
3,840,309	+		LRK54_RS17565	0.18	-0.6
3,840,309	+		LRK54_RS17565	0.18	+0.8
3,840,309	+		LRK54_RS17565	0.18	+1.4
3,840,310	-		LRK54_RS17565	0.18	-2.0
3,840,310	-		LRK54_RS17565	0.18	+0.6
3,840,310	-		LRK54_RS17565	0.18	-2.7
3,840,310	-		LRK54_RS17565	0.18	-2.3
3,840,310	-		LRK54_RS17565	0.18	-2.8
3,840,310	-		LRK54_RS17565	0.18	-1.1
3,840,310	-		LRK54_RS17565	0.18	+0.2
3,840,310	-		LRK54_RS17565	0.18	+0.3
3,840,312	+		LRK54_RS17565	0.18	-2.4
3,840,386	-		LRK54_RS17565	0.24	-2.2
3,840,497	+		LRK54_RS17565	0.34	-2.3
3,840,564	+		LRK54_RS17565	0.39	-0.9
3,840,564	+		LRK54_RS17565	0.39	-0.1
3,840,565	-		LRK54_RS17565	0.40	-2.0
3,840,565	-		LRK54_RS17565	0.40	-1.3
3,840,565	-		LRK54_RS17565	0.40	-1.2
3,840,565	-		LRK54_RS17565	0.40	+0.8
3,840,565	-		LRK54_RS17565	0.40	-1.3
3,840,698	+		LRK54_RS17565	0.51	-0.4
3,840,698	+		LRK54_RS17565	0.51	+0.8
3,840,698	+		LRK54_RS17565	0.51	-0.5
3,840,698	+		LRK54_RS17565	0.51	-0.1
3,840,698	+		LRK54_RS17565	0.51	-1.3
3,840,699	-		LRK54_RS17565	0.51	-0.8
3,840,699	-		LRK54_RS17565	0.51	-1.7
3,840,699	-		LRK54_RS17565	0.51	-1.1
3,840,699	-		LRK54_RS17565	0.51	-1.3
3,840,699	-		LRK54_RS17565	0.51	-0.4
3,840,722	+		LRK54_RS17565	0.53	-2.1
3,840,722	+		LRK54_RS17565	0.53	-1.0
3,840,722	+		LRK54_RS17565	0.53	-1.8
3,840,722	+		LRK54_RS17565	0.53	-1.8
3,840,722	+		LRK54_RS17565	0.53	-2.8
3,840,722	+		LRK54_RS17565	0.53	-3.2
3,840,722	+		LRK54_RS17565	0.53	-0.2
3,840,722	+		LRK54_RS17565	0.53	-0.9
3,840,722	+		LRK54_RS17565	0.53	-2.4
3,840,722	+		LRK54_RS17565	0.53	+0.0
3,840,722	+		LRK54_RS17565	0.53	-0.5
3,840,722	+		LRK54_RS17565	0.53	-0.2
3,840,722	+		LRK54_RS17565	0.53	-1.3
3,840,722	+		LRK54_RS17565	0.53	-1.8
3,840,722	+		LRK54_RS17565	0.53	-0.6
3,840,722	+		LRK54_RS17565	0.53	+2.1
3,840,722	+		LRK54_RS17565	0.53	-0.7
3,840,722	+		LRK54_RS17565	0.53	-2.9
3,840,722	+		LRK54_RS17565	0.53	-2.0
3,840,722	+		LRK54_RS17565	0.53	-0.7
3,840,722	+		LRK54_RS17565	0.53	-2.3
3,840,722	+		LRK54_RS17565	0.53	-1.1
3,840,722	+		LRK54_RS17565	0.53	-1.3
3,840,722	+		LRK54_RS17565	0.53	+0.2
3,840,723	-		LRK54_RS17565	0.53	-1.1
3,840,723	-		LRK54_RS17565	0.53	-2.8
3,840,723	-		LRK54_RS17565	0.53	-2.4
3,840,723	-		LRK54_RS17565	0.53	-0.2
3,840,723	-		LRK54_RS17565	0.53	-1.0
3,840,723	-		LRK54_RS17565	0.53	-0.8
3,840,723	-		LRK54_RS17565	0.53	-2.0
3,840,723	-		LRK54_RS17565	0.53	-1.8
3,840,723	-		LRK54_RS17565	0.53	-1.9
3,840,723	-		LRK54_RS17565	0.53	-1.2
3,840,723	-		LRK54_RS17565	0.53	-1.7
3,840,723	-		LRK54_RS17565	0.53	-2.5
3,840,723	-		LRK54_RS17565	0.53	-1.8
3,840,723	-		LRK54_RS17565	0.53	-0.8
3,840,723	-		LRK54_RS17565	0.53	-1.8
3,840,723	-		LRK54_RS17565	0.53	-2.0
3,840,723	-		LRK54_RS17565	0.53	-1.8
3,840,723	-		LRK54_RS17565	0.53	-1.3
3,840,723	-		LRK54_RS17565	0.53	-0.5
3,840,723	-		LRK54_RS17565	0.53	-0.3
3,840,723	-		LRK54_RS17565	0.53	-1.1
3,840,723	-		LRK54_RS17565	0.53	-0.9
3,840,723	-		LRK54_RS17565	0.53	+0.8
3,840,723	-		LRK54_RS17565	0.53	-0.3
3,840,723	-		LRK54_RS17565	0.53	-1.5
3,840,723	-		LRK54_RS17565	0.53	-0.2
3,840,723	-		LRK54_RS17565	0.53	-2.2
3,840,723	-		LRK54_RS17565	0.53	+1.8
3,840,723	-		LRK54_RS17565	0.53	-0.5
3,840,869	+		LRK54_RS17565	0.66	-0.8
3,840,869	+		LRK54_RS17565	0.66	-2.1
3,840,869	+		LRK54_RS17565	0.66	-2.0
3,840,869	+		LRK54_RS17565	0.66	-0.2
3,840,869	+		LRK54_RS17565	0.66	-1.9
3,840,869	+		LRK54_RS17565	0.66	-2.5
3,840,869	+		LRK54_RS17565	0.66	-2.0
3,840,869	+		LRK54_RS17565	0.66	-3.3
3,840,869	+		LRK54_RS17565	0.66	-1.2
3,840,869	+		LRK54_RS17565	0.66	-1.3
3,840,870	-		LRK54_RS17565	0.66	-0.8
3,840,870	-		LRK54_RS17565	0.66	+0.4
3,840,870	-		LRK54_RS17565	0.66	-2.4
3,840,870	-		LRK54_RS17565	0.66	-1.3
3,840,870	-		LRK54_RS17565	0.66	+0.4
3,840,870	-		LRK54_RS17565	0.66	-0.9
3,841,025	+		LRK54_RS17565	0.79	-1.8
3,841,025	+		LRK54_RS17565	0.79	-1.8
3,841,026	-		LRK54_RS17565	0.79	-1.9
3,841,027	+		LRK54_RS17565	0.79	-2.8
3,841,027	+		LRK54_RS17565	0.79	-0.2
3,841,027	+		LRK54_RS17565	0.79	-1.0
3,841,027	+		LRK54_RS17565	0.79	-0.9
3,841,027	+		LRK54_RS17565	0.79	-2.1
3,841,028	-		LRK54_RS17565	0.79	-1.2
3,841,028	-		LRK54_RS17565	0.79	-1.6
3,841,028	-		LRK54_RS17565	0.79	+0.0
3,841,028	-		LRK54_RS17565	0.79	-1.2