Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS16650

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
3,655,364	+				+0.1
3,655,364	+				+0.5
3,655,365	-				-0.3
3,655,365	-				-0.8
3,655,365	-				+0.0
3,655,403	+				+0.2
3,655,403	+				-0.3
3,655,404	-				-2.1
3,655,404	-				+0.7
3,655,824	+		LRK54_RS16645	0.59	+0.3
3,655,824	+		LRK54_RS16645	0.59	+1.2
3,655,824	+		LRK54_RS16645	0.59	-0.8
3,655,824	+		LRK54_RS16645	0.59	+0.2
3,655,824	+		LRK54_RS16645	0.59	-0.3
3,655,824	+		LRK54_RS16645	0.59	-0.9
3,655,824	+		LRK54_RS16645	0.59	-0.6
3,655,824	+		LRK54_RS16645	0.59	-0.1
3,655,824	+		LRK54_RS16645	0.59	-0.8
3,655,824	+		LRK54_RS16645	0.59	+1.0
3,655,824	+		LRK54_RS16645	0.59	-2.0
3,655,824	+		LRK54_RS16645	0.59	-0.0
3,655,824	+		LRK54_RS16645	0.59	+1.7
3,655,825	-		LRK54_RS16645	0.59	-0.3
3,655,825	-		LRK54_RS16645	0.59	+0.4
3,655,825	-		LRK54_RS16645	0.59	+0.8
3,655,825	-		LRK54_RS16645	0.59	-0.0
3,655,825	-		LRK54_RS16645	0.59	+0.4
3,655,825	-		LRK54_RS16645	0.59	-1.8
3,655,825	-		LRK54_RS16645	0.59	+1.7
3,655,825	-		LRK54_RS16645	0.59	-1.3
3,656,058	+				-0.1
3,656,058	+				-0.2
3,656,058	+				-1.2
3,656,058	+				-0.5
3,656,058	+				+0.0
3,656,058	+				-0.3
3,656,058	+				-0.2
3,656,058	+				-0.8
3,656,058	+				+1.2
3,656,058	+				+1.7
3,656,058	+				+0.0
3,656,058	+				-1.4
3,656,058	+				-2.3
3,656,058	+				+0.1
3,656,058	+				+0.9
3,656,058	+				-0.1
3,656,058	+				-1.0
3,656,058	+				-0.1
3,656,058	+				-2.3
3,656,058	+				-1.6
3,656,058	+				+0.1
3,656,058	+				+0.1
3,656,058	+				+0.2
3,656,059	-				+0.7
3,656,059	-				+0.4
3,656,059	-				-0.4
3,656,059	-				+0.0
3,656,059	-				-0.8
3,656,059	-				+0.1
3,656,059	-				-0.3
3,656,059	-				+1.2
3,656,059	-				-0.8
3,656,059	-				+1.7
3,656,059	-				-0.8
3,656,059	-				+0.4
3,656,059	-				-2.4
3,656,059	-				-0.9
3,656,059	-				-0.5
3,656,059	-				+0.2
3,656,059	-				+1.7
3,656,059	-				+0.4
3,656,059	-				-0.2
3,656,059	-				+0.5
3,656,059	-				-0.5
3,656,059	-				+0.4
3,656,059	-				-0.9
3,656,059	-				+0.7
3,656,059	-				+0.3
3,656,059	-				+0.3
3,656,059	-				-0.1
3,656,059	-				+0.6
3,656,365	+		LRK54_RS16650	0.22	-2.2
3,656,366	-		LRK54_RS16650	0.22	-1.2
3,656,368	+		LRK54_RS16650	0.23	-1.2
3,656,368	+		LRK54_RS16650	0.23	+1.5
3,656,369	-		LRK54_RS16650	0.23	-1.8
3,656,491	+		LRK54_RS16650	0.38	-1.8
3,656,491	+		LRK54_RS16650	0.38	-0.2
3,656,491	+		LRK54_RS16650	0.38	-1.3
3,656,491	+		LRK54_RS16650	0.38	-0.7
3,656,491	+		LRK54_RS16650	0.38	+0.1
3,656,491	+		LRK54_RS16650	0.38	-0.0
3,656,491	+		LRK54_RS16650	0.38	-2.6
3,656,491	+		LRK54_RS16650	0.38	-1.6
3,656,491	+		LRK54_RS16650	0.38	-1.2
3,656,491	+		LRK54_RS16650	0.38	-1.6
3,656,492	-		LRK54_RS16650	0.38	-0.8
3,656,492	-		LRK54_RS16650	0.38	-1.2
3,656,492	-		LRK54_RS16650	0.38	-1.6
3,656,492	-		LRK54_RS16650	0.38	+0.8
3,656,492	-		LRK54_RS16650	0.38	-2.7
3,656,492	-		LRK54_RS16650	0.38	-3.4
3,656,587	+		LRK54_RS16650	0.50	+0.8
3,656,587	+		LRK54_RS16650	0.50	-0.2
3,656,587	+		LRK54_RS16650	0.50	-1.1
3,656,587	+		LRK54_RS16650	0.50	-0.6
3,656,587	+		LRK54_RS16650	0.50	+0.1
3,656,587	+		LRK54_RS16650	0.50	-0.9
3,656,587	+		LRK54_RS16650	0.50	-0.8
3,656,587	+		LRK54_RS16650	0.50	-1.1
3,656,587	+		LRK54_RS16650	0.50	-1.2
3,656,588	-		LRK54_RS16650	0.50	-0.2
3,656,588	-		LRK54_RS16650	0.50	-2.1
3,656,588	-		LRK54_RS16650	0.50	-2.6
3,656,588	-		LRK54_RS16650	0.50	-1.6
3,656,588	-		LRK54_RS16650	0.50	-1.6
3,656,588	-		LRK54_RS16650	0.50	-0.8
3,656,588	-		LRK54_RS16650	0.50	-3.2
3,656,588	-		LRK54_RS16650	0.50	-1.6
3,656,955	-				-1.2
3,656,998	+				-0.8
3,656,998	+				-0.2
3,656,998	+				+0.5
3,656,998	+				+0.1
3,656,998	+				-2.1
3,656,998	+				+0.3
3,656,998	+				-0.2
3,656,998	+				+0.8
3,656,998	+				-1.6
3,656,998	+				-0.2
3,656,998	+				-1.6
3,656,998	+				+0.8
3,656,998	+				+0.3
3,656,998	+				-0.7
3,656,998	+				+0.3
3,656,998	+				-1.6
3,656,999	-				-2.1
3,656,999	-				-0.2
3,656,999	-				-2.7
3,656,999	-				-2.7
3,656,999	-				-1.6
3,656,999	-				-0.8
3,656,999	-				-0.2
3,656,999	-				-2.7
3,656,999	-				+0.2
3,656,999	-				-2.4
3,656,999	-				+0.8
3,656,999	-				-1.2
3,656,999	-				-0.8
3,656,999	-				-1.6
3,656,999	-				-3.2
3,657,169	+		LRK54_RS16655	0.26	-1.9
3,657,169	+		LRK54_RS16655	0.26	-2.1
3,657,169	+		LRK54_RS16655	0.26	-1.0
3,657,169	+		LRK54_RS16655	0.26	+0.1
3,657,170	-		LRK54_RS16655	0.27	-1.2
3,657,170	-		LRK54_RS16655	0.27	-2.1
3,657,302	-		LRK54_RS16655	0.46	-1.8
3,657,425	-		LRK54_RS16655	0.64	-2.4
3,657,690	+				-1.6
3,657,690	+				-1.8
3,657,690	+				-2.2
3,657,690	+				-1.3
3,657,690	+				-0.3
3,657,690	+				-0.3
3,657,690	+				-1.8
3,657,690	+				-1.6
3,657,691	-				-0.3
3,657,691	-				-1.3
3,657,691	-				-1.6
3,657,691	-				-2.7
3,657,691	-				-2.1
3,657,691	-				-0.8
3,657,732	+		LRK54_RS16660	0.10	-3.1
3,657,732	+		LRK54_RS16660	0.10	-0.3
3,657,732	+		LRK54_RS16660	0.10	-0.3
3,657,732	+		LRK54_RS16660	0.10	-1.8
3,657,732	+		LRK54_RS16660	0.10	-0.3
3,657,732	+		LRK54_RS16660	0.10	-0.3
3,657,732	+		LRK54_RS16660	0.10	-0.3
3,657,732	+		LRK54_RS16660	0.10	-1.6
3,657,732	+		LRK54_RS16660	0.10	+0.7
3,657,732	+		LRK54_RS16660	0.10	-1.6
3,657,732	+		LRK54_RS16660	0.10	-3.0
3,657,732	+		LRK54_RS16660	0.10	-1.3
3,657,732	+		LRK54_RS16660	0.10	-2.6
3,657,732	+		LRK54_RS16660	0.10	-1.6
3,657,733	-		LRK54_RS16660	0.10	-0.3
3,657,733	-		LRK54_RS16660	0.10	-1.6
3,657,733	-		LRK54_RS16660	0.10	-3.3
3,657,733	-		LRK54_RS16660	0.10	-2.1
3,657,733	-		LRK54_RS16660	0.10	-0.8
3,657,733	-		LRK54_RS16660	0.10	-1.6
3,657,733	-		LRK54_RS16660	0.10	-2.4
3,657,733	-		LRK54_RS16660	0.10	-1.3
3,657,733	-		LRK54_RS16660	0.10	-2.1
3,657,733	-		LRK54_RS16660	0.10	-0.3
3,657,733	-		LRK54_RS16660	0.10	-0.3
3,657,733	-		LRK54_RS16660	0.10	-0.8
3,657,733	-		LRK54_RS16660	0.10	-1.3
3,657,733	-		LRK54_RS16660	0.10	-0.3
3,657,733	-		LRK54_RS16660	0.10	-2.6
3,657,733	-		LRK54_RS16660	0.10	-3.1
3,657,733	-		LRK54_RS16660	0.10	-1.8
3,657,733	-		LRK54_RS16660	0.10	-0.8
3,657,735	+		LRK54_RS16660	0.11	-0.3
3,657,735	+		LRK54_RS16660	0.11	-3.3
3,657,735	+		LRK54_RS16660	0.11	-3.0
3,657,735	+		LRK54_RS16660	0.11	-0.8
3,657,735	+		LRK54_RS16660	0.11	-0.7
3,657,735	+		LRK54_RS16660	0.11	-0.8
3,657,735	+		LRK54_RS16660	0.11	-1.6
3,657,735	+		LRK54_RS16660	0.11	-0.8
3,657,735	+		LRK54_RS16660	0.11	-0.3
3,657,735	+		LRK54_RS16660	0.11	-1.6
3,657,735	+		LRK54_RS16660	0.11	+0.7
3,657,735	+		LRK54_RS16660	0.11	-1.6
3,657,735	+		LRK54_RS16660	0.11	-3.1
3,657,735	+		LRK54_RS16660	0.11	-4.3
3,657,736	-		LRK54_RS16660	0.11	-3.2
3,657,736	-		LRK54_RS16660	0.11	-0.3
3,657,736	-		LRK54_RS16660	0.11	-1.6
3,657,736	-		LRK54_RS16660	0.11	-2.3
3,657,736	-		LRK54_RS16660	0.11	-2.4
3,657,736	-		LRK54_RS16660	0.11	-0.3
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,736	-		LRK54_RS16660	0.11	-2.1
3,657,736	-		LRK54_RS16660	0.11	-1.6
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,736	-		LRK54_RS16660	0.11	-1.3
3,657,736	-		LRK54_RS16660	0.11	-2.7
3,657,736	-		LRK54_RS16660	0.11	+0.7
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,736	-		LRK54_RS16660	0.11	-1.3
3,657,736	-		LRK54_RS16660	0.11	-0.3
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,736	-		LRK54_RS16660	0.11	-0.3
3,657,736	-		LRK54_RS16660	0.11	-2.1
3,657,736	-		LRK54_RS16660	0.11	-3.2
3,657,736	-		LRK54_RS16660	0.11	-2.4
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,736	-		LRK54_RS16660	0.11	+0.7
3,657,736	-		LRK54_RS16660	0.11	-1.6
3,657,736	-		LRK54_RS16660	0.11	-1.6
3,657,736	-		LRK54_RS16660	0.11	-1.6
3,657,736	-		LRK54_RS16660	0.11	-0.8
3,657,885	+		LRK54_RS16660	0.35	-3.1
3,657,885	+		LRK54_RS16660	0.35	-1.8
3,657,885	+		LRK54_RS16660	0.35	-2.8
3,657,885	+		LRK54_RS16660	0.35	-2.3