Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13005

Experiment: R2A with SpecU metal mix 1 X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with SpecU metal mix 1 X
2,903,182	+		LRK54_RS13000	0.54	+0.0
2,903,182	+		LRK54_RS13000	0.54	+0.0
2,903,182	+		LRK54_RS13000	0.54	+1.9
2,903,182	+		LRK54_RS13000	0.54	-1.2
2,903,182	+		LRK54_RS13000	0.54	+0.5
2,903,182	+		LRK54_RS13000	0.54	-0.6
2,903,182	+		LRK54_RS13000	0.54	-0.1
2,903,182	+		LRK54_RS13000	0.54	+0.9
2,903,182	+		LRK54_RS13000	0.54	+0.1
2,903,182	+		LRK54_RS13000	0.54	-1.8
2,903,182	+		LRK54_RS13000	0.54	+0.2
2,903,183	-		LRK54_RS13000	0.54	-0.9
2,903,183	-		LRK54_RS13000	0.54	-1.1
2,903,183	-		LRK54_RS13000	0.54	+0.5
2,903,183	-		LRK54_RS13000	0.54	+0.9
2,903,183	-		LRK54_RS13000	0.54	-0.4
2,903,183	-		LRK54_RS13000	0.54	-0.8
2,903,183	-		LRK54_RS13000	0.54	-0.9
2,903,183	-		LRK54_RS13000	0.54	+0.1
2,903,183	-		LRK54_RS13000	0.54	+0.1
2,903,183	-		LRK54_RS13000	0.54	-0.2
2,903,287	+		LRK54_RS13000	0.60	-0.2
2,903,287	+		LRK54_RS13000	0.60	-0.6
2,903,287	+		LRK54_RS13000	0.60	+1.8
2,903,344	+		LRK54_RS13000	0.63	+0.6
2,903,344	+		LRK54_RS13000	0.63	+1.3
2,903,344	+		LRK54_RS13000	0.63	-1.1
2,903,344	+		LRK54_RS13000	0.63	+0.1
2,903,344	+		LRK54_RS13000	0.63	-0.4
2,903,344	+		LRK54_RS13000	0.63	-0.2
2,903,345	-		LRK54_RS13000	0.63	+1.8
2,903,403	+		LRK54_RS13000	0.66	+0.8
2,903,403	+		LRK54_RS13000	0.66	+0.8
2,903,404	-		LRK54_RS13000	0.66	+1.3
2,903,437	+		LRK54_RS13000	0.68	-1.6
2,903,437	+		LRK54_RS13000	0.68	+0.3
2,903,437	+		LRK54_RS13000	0.68	-0.6
2,903,437	+		LRK54_RS13000	0.68	-1.0
2,903,437	+		LRK54_RS13000	0.68	-0.8
2,903,438	-		LRK54_RS13000	0.68	+1.1
2,903,438	-		LRK54_RS13000	0.68	-0.2
2,903,438	-		LRK54_RS13000	0.68	+0.8
2,903,438	-		LRK54_RS13000	0.68	+0.8
2,903,438	-		LRK54_RS13000	0.68	-1.1
2,903,594	+		LRK54_RS13000	0.77	-0.6
2,903,594	+		LRK54_RS13000	0.77	-0.8
2,903,595	-		LRK54_RS13000	0.77	-0.9
2,903,595	-		LRK54_RS13000	0.77	+0.0
2,903,595	-		LRK54_RS13000	0.77	+0.1
2,903,595	-		LRK54_RS13000	0.77	-2.0
2,903,595	-		LRK54_RS13000	0.77	-0.4
2,903,595	-		LRK54_RS13000	0.77	-0.4
2,903,595	-		LRK54_RS13000	0.77	+0.2
2,903,633	-		LRK54_RS13000	0.79	+1.1
2,903,797	+		LRK54_RS13000	0.88	-0.4
2,903,797	+		LRK54_RS13000	0.88	-1.9
2,903,797	+		LRK54_RS13000	0.88	+0.8
2,903,798	-		LRK54_RS13000	0.88	-0.5
2,903,798	-		LRK54_RS13000	0.88	-0.4
2,903,798	-		LRK54_RS13000	0.88	-0.5
2,903,869	+				+0.3
2,903,869	+				-0.2
2,903,869	+				-0.3
2,903,869	+				-1.4
2,903,870	-				-0.2
2,903,870	-				-1.2
2,903,870	-				-0.5
2,903,870	-				+1.1
2,903,870	-				-1.0
2,903,870	-				+1.6
2,903,977	+				-0.3
2,903,977	+				-0.9
2,903,978	-				+0.2
2,903,978	-				-1.1
2,903,978	-				-0.5
2,904,016	+				-1.0
2,904,016	+				+0.0
2,904,016	+				-0.6
2,904,016	+				-0.5
2,904,016	+				+0.1
2,904,016	+				-0.8
2,904,017	-				+0.0
2,904,017	-				+0.4
2,904,017	-				+0.1
2,904,017	-				-1.1
2,904,054	+				+0.8
2,904,054	+				+0.0
2,904,054	+				+0.6
2,904,054	+				-0.2
2,904,054	+				-0.4
2,904,054	+				-0.2
2,904,054	+				-0.8
2,904,054	+				-0.1
2,904,054	+				+1.0
2,904,054	+				+1.8
2,904,054	+				+0.2
2,904,054	+				+1.6
2,904,054	+				-0.1
2,904,054	+				+0.2
2,904,055	-				+0.9
2,904,055	-				+1.3
2,904,055	-				+1.6
2,904,055	-				+1.9
2,904,055	-				+1.0
2,904,055	-				-0.2
2,904,055	-				+0.4
2,904,055	-				+0.6
2,904,055	-				+0.5
2,904,055	-				+1.2
2,904,055	-				-0.6
2,904,055	-				+4.1
2,904,055	-				+1.5
2,904,055	-				+0.5
2,904,055	-				+1.5
2,904,055	-				+1.7
2,904,058	+				+0.8
2,904,058	+				-0.4
2,904,058	+				+0.4
2,904,058	+				+0.6
2,904,058	+				+1.2
2,904,058	+				+0.1
2,904,058	+				-0.5
2,904,058	+				-0.0
2,904,058	+				+0.4
2,904,059	-				+1.0
2,904,059	-				+1.8
2,904,059	-				-0.8
2,904,059	-				+1.0
2,904,059	-				+0.2
2,904,059	-				-1.2
2,904,059	-				+1.2
2,904,059	-				+0.6
2,904,059	-				+1.2
2,904,059	-				+0.4
2,904,059	-				+0.7
2,904,059	-				+1.6
2,904,241	-				+1.8
2,904,355	+		LRK54_RS13005	0.16	+1.3
2,904,355	+		LRK54_RS13005	0.16	+1.8
2,904,355	+		LRK54_RS13005	0.16	+0.8
2,904,529	+		LRK54_RS13005	0.28	+1.2
2,904,529	+		LRK54_RS13005	0.28	+0.9
2,904,529	+		LRK54_RS13005	0.28	+1.0
2,904,529	+		LRK54_RS13005	0.28	+1.0
2,904,529	+		LRK54_RS13005	0.28	+1.7
2,904,529	+		LRK54_RS13005	0.28	-0.2
2,904,529	+		LRK54_RS13005	0.28	+1.4
2,904,529	+		LRK54_RS13005	0.28	+0.0
2,904,529	+		LRK54_RS13005	0.28	+1.2
2,904,529	+		LRK54_RS13005	0.28	+2.1
2,904,529	+		LRK54_RS13005	0.28	+1.4
2,904,529	+		LRK54_RS13005	0.28	+0.7
2,904,529	+		LRK54_RS13005	0.28	-0.7
2,904,529	+		LRK54_RS13005	0.28	+0.3
2,904,529	+		LRK54_RS13005	0.28	+1.1
2,904,529	+		LRK54_RS13005	0.28	+1.1
2,904,529	+		LRK54_RS13005	0.28	+2.4
2,904,529	+		LRK54_RS13005	0.28	+0.5
2,904,529	+		LRK54_RS13005	0.28	+1.4
2,904,529	+		LRK54_RS13005	0.28	+1.0
2,904,529	+		LRK54_RS13005	0.28	+0.3
2,904,529	+		LRK54_RS13005	0.28	+1.0
2,904,529	+		LRK54_RS13005	0.28	+0.6
2,904,529	+		LRK54_RS13005	0.28	+2.4
2,904,529	+		LRK54_RS13005	0.28	+1.8
2,904,529	+		LRK54_RS13005	0.28	-0.4
2,904,529	+		LRK54_RS13005	0.28	+0.8
2,904,529	+		LRK54_RS13005	0.28	+0.4
2,904,529	+		LRK54_RS13005	0.28	-0.6
2,904,529	+		LRK54_RS13005	0.28	+2.3
2,904,529	+		LRK54_RS13005	0.28	+1.4
2,904,529	+		LRK54_RS13005	0.28	+0.0
2,904,530	-		LRK54_RS13005	0.28	+2.6
2,904,530	-		LRK54_RS13005	0.28	+1.6
2,904,530	-		LRK54_RS13005	0.28	+0.9
2,904,530	-		LRK54_RS13005	0.28	+2.4
2,904,530	-		LRK54_RS13005	0.28	+0.2
2,904,530	-		LRK54_RS13005	0.28	+1.0
2,904,530	-		LRK54_RS13005	0.28	+0.2
2,904,530	-		LRK54_RS13005	0.28	+0.2
2,904,530	-		LRK54_RS13005	0.28	+0.6
2,904,530	-		LRK54_RS13005	0.28	+1.5
2,904,530	-		LRK54_RS13005	0.28	+0.1
2,904,530	-		LRK54_RS13005	0.28	+0.8
2,904,530	-		LRK54_RS13005	0.28	-0.2
2,904,530	-		LRK54_RS13005	0.28	+1.6
2,904,530	-		LRK54_RS13005	0.28	+0.7
2,904,530	-		LRK54_RS13005	0.28	+0.9
2,904,530	-		LRK54_RS13005	0.28	+1.4
2,904,530	-		LRK54_RS13005	0.28	+0.3
2,904,530	-		LRK54_RS13005	0.28	+0.1
2,904,530	-		LRK54_RS13005	0.28	+1.3
2,904,530	-		LRK54_RS13005	0.28	+1.8
2,904,530	-		LRK54_RS13005	0.28	+0.7
2,904,530	-		LRK54_RS13005	0.28	+1.3
2,904,530	-		LRK54_RS13005	0.28	-0.2
2,904,530	-		LRK54_RS13005	0.28	+0.9
2,904,530	-		LRK54_RS13005	0.28	+0.5
2,904,530	-		LRK54_RS13005	0.28	+1.3
2,904,530	-		LRK54_RS13005	0.28	+2.1
2,904,530	-		LRK54_RS13005	0.28	+0.8
2,904,530	-		LRK54_RS13005	0.28	+2.4
2,904,530	-		LRK54_RS13005	0.28	+1.9
2,904,530	-		LRK54_RS13005	0.28	+0.9
2,904,530	-		LRK54_RS13005	0.28	+1.3
2,904,730	+		LRK54_RS13005	0.42	+1.2
2,904,730	+		LRK54_RS13005	0.42	+1.4
2,904,731	-		LRK54_RS13005	0.42	+1.6
2,904,731	-		LRK54_RS13005	0.42	+0.6
2,904,731	-		LRK54_RS13005	0.42	+1.2
2,905,006	+		LRK54_RS13005	0.61	+1.4
2,905,006	+		LRK54_RS13005	0.61	+2.1
2,905,006	+		LRK54_RS13005	0.61	+1.2
2,905,006	+		LRK54_RS13005	0.61	+1.1
2,905,006	+		LRK54_RS13005	0.61	+0.1
2,905,006	+		LRK54_RS13005	0.61	+1.8
2,905,006	+		LRK54_RS13005	0.61	+0.8
2,905,006	+		LRK54_RS13005	0.61	+1.0
2,905,006	+		LRK54_RS13005	0.61	+0.6
2,905,006	+		LRK54_RS13005	0.61	+0.9
2,905,006	+		LRK54_RS13005	0.61	+0.7
2,905,006	+		LRK54_RS13005	0.61	+1.4
2,905,007	-		LRK54_RS13005	0.61	+0.4
2,905,007	-		LRK54_RS13005	0.61	+1.3
2,905,007	-		LRK54_RS13005	0.61	+0.5
2,905,007	-		LRK54_RS13005	0.61	+1.3
2,905,007	-		LRK54_RS13005	0.61	+0.6
2,905,007	-		LRK54_RS13005	0.61	+1.2
2,905,007	-		LRK54_RS13005	0.61	-2.2
2,905,007	-		LRK54_RS13005	0.61	-1.2
2,905,007	-		LRK54_RS13005	0.61	+0.4
2,905,007	-		LRK54_RS13005	0.61	+1.2
2,905,007	-		LRK54_RS13005	0.61	+1.1
2,905,007	-		LRK54_RS13005	0.61	+0.3
2,905,007	-		LRK54_RS13005	0.61	+1.1
2,905,007	-		LRK54_RS13005	0.61	-0.2
2,905,007	-		LRK54_RS13005	0.61	-0.8
2,905,009	+		LRK54_RS13005	0.61	+0.5
2,905,009	+		LRK54_RS13005	0.61	+1.4
2,905,009	+		LRK54_RS13005	0.61	+0.9
2,905,009	+		LRK54_RS13005	0.61	+1.7
2,905,009	+		LRK54_RS13005	0.61	+0.9
2,905,009	+		LRK54_RS13005	0.61	-0.1
2,905,009	+		LRK54_RS13005	0.61	+1.1
2,905,009	+		LRK54_RS13005	0.61	+2.4
2,905,009	+		LRK54_RS13005	0.61	+1.0
2,905,009	+		LRK54_RS13005	0.61	+0.4
2,905,009	+		LRK54_RS13005	0.61	+0.2
2,905,009	+		LRK54_RS13005	0.61	+2.8
2,905,009	+		LRK54_RS13005	0.61	+1.2
2,905,009	+		LRK54_RS13005	0.61	+0.5
2,905,009	+		LRK54_RS13005	0.61	-1.0
2,905,010	-		LRK54_RS13005	0.62	+1.3
2,905,010	-		LRK54_RS13005	0.62	+0.8
2,905,010	-		LRK54_RS13005	0.62	+1.6
2,905,010	-		LRK54_RS13005	0.62	+0.8
2,905,010	-		LRK54_RS13005	0.62	+0.8
2,905,010	-		LRK54_RS13005	0.62	+0.8
2,905,010	-		LRK54_RS13005	0.62	+2.3
2,905,010	-		LRK54_RS13005	0.62	+1.4
2,905,010	-		LRK54_RS13005	0.62	+1.2
2,905,010	-		LRK54_RS13005	0.62	+1.3
2,905,017	+		LRK54_RS13005	0.62	+0.9
2,905,017	+		LRK54_RS13005	0.62	-0.2
2,905,017	+		LRK54_RS13005	0.62	+2.0
2,905,017	+		LRK54_RS13005	0.62	+0.4
2,905,017	+		LRK54_RS13005	0.62	+1.9
2,905,017	+		LRK54_RS13005	0.62	-0.6
2,905,017	+		LRK54_RS13005	0.62	+0.9
2,905,017	+		LRK54_RS13005	0.62	+1.3
2,905,017	+		LRK54_RS13005	0.62	+0.7
2,905,018	-		LRK54_RS13005	0.62	+1.0
2,905,018	-		LRK54_RS13005	0.62	+0.3
2,905,018	-		LRK54_RS13005	0.62	+0.3
2,905,018	-		LRK54_RS13005	0.62	+1.8
2,905,018	-		LRK54_RS13005	0.62	+1.7
2,905,018	-		LRK54_RS13005	0.62	+3.1
2,905,282	+		LRK54_RS13005	0.81	+1.8
2,905,282	+		LRK54_RS13005	0.81	-0.0
2,905,282	+		LRK54_RS13005	0.81	-0.2
2,905,282	+		LRK54_RS13005	0.81	+0.8
2,905,282	+		LRK54_RS13005	0.81	+0.9
2,905,282	+		LRK54_RS13005	0.81	+0.8
2,905,283	-		LRK54_RS13005	0.81	-0.2
2,905,283	-		LRK54_RS13005	0.81	+0.4
2,905,283	-		LRK54_RS13005	0.81	+1.3
2,905,283	-		LRK54_RS13005	0.81	+1.0
2,905,283	-		LRK54_RS13005	0.81	+0.4
2,905,283	-		LRK54_RS13005	0.81	+0.4
2,905,319	+		LRK54_RS13005	0.83	-1.0
2,905,320	-		LRK54_RS13005	0.83	+0.2
2,905,320	-		LRK54_RS13005	0.83	+1.4
2,905,320	-		LRK54_RS13005	0.83	+0.6
2,905,468	+				-0.0
2,905,468	+				-0.2
2,905,468	+				+0.4
2,905,468	+				-0.6
2,905,468	+				+0.8
2,905,468	+				-0.8
2,905,468	+				+1.0
2,905,468	+				+1.0
2,905,469	-				+1.4
2,905,469	-				+1.0
2,905,469	-				+2.3
2,905,469	-				-0.1
2,905,469	-				+1.8
2,905,469	-				+0.9
2,905,469	-				+0.5
2,905,620	+				-0.3
2,905,620	+				-1.6
2,905,620	+				-0.2
2,905,621	-				+1.3
2,905,621	-				+0.2
2,905,621	-				-0.4
2,905,621	-				-1.6
2,905,646	-				+0.4
2,905,816	-		LRK54_RS13010	0.11	+1.7
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+2.6
2,905,843	+		LRK54_RS13010	0.14	+1.6
2,905,843	+		LRK54_RS13010	0.14	+1.5
2,905,843	+		LRK54_RS13010	0.14	+1.7
2,905,843	+		LRK54_RS13010	0.14	+1.7
2,905,843	+		LRK54_RS13010	0.14	+1.2
2,905,843	+		LRK54_RS13010	0.14	+1.8
2,905,843	+		LRK54_RS13010	0.14	+1.5
2,905,843	+		LRK54_RS13010	0.14	+0.6
2,905,843	+		LRK54_RS13010	0.14	+1.4
2,905,843	+		LRK54_RS13010	0.14	+1.4
2,905,843	+		LRK54_RS13010	0.14	+0.5
2,905,843	+		LRK54_RS13010	0.14	+0.1
2,905,843	+		LRK54_RS13010	0.14	+2.1
2,905,843	+		LRK54_RS13010	0.14	+0.3
2,905,843	+		LRK54_RS13010	0.14	-0.5
2,905,843	+		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+1.6
2,905,844	-		LRK54_RS13010	0.14	+1.0
2,905,844	-		LRK54_RS13010	0.14	+2.3
2,905,844	-		LRK54_RS13010	0.14	+2.9
2,905,844	-		LRK54_RS13010	0.14	+0.8
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	+1.9
2,905,844	-		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.8
2,905,844	-		LRK54_RS13010	0.14	+0.4
2,905,844	-		LRK54_RS13010	0.14	+0.6
2,905,844	-		LRK54_RS13010	0.14	+0.2
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,844	-		LRK54_RS13010	0.14	+1.8
2,905,844	-		LRK54_RS13010	0.14	+0.1
2,905,844	-		LRK54_RS13010	0.14	+1.6
2,905,844	-		LRK54_RS13010	0.14	+2.0
2,905,844	-		LRK54_RS13010	0.14	+1.6
2,905,844	-		LRK54_RS13010	0.14	+1.4
2,905,844	-		LRK54_RS13010	0.14	+0.5
2,905,844	-		LRK54_RS13010	0.14	+0.9
2,905,999	+		LRK54_RS13010	0.29	+0.9
2,906,102	-		LRK54_RS13010	0.39	+1.7
2,906,102	-		LRK54_RS13010	0.39	+0.5
2,906,102	-		LRK54_RS13010	0.39	-1.6
2,906,110	+		LRK54_RS13010	0.40	+0.9
2,906,110	+		LRK54_RS13010	0.40	+1.2
2,906,110	+		LRK54_RS13010	0.40	+0.5
2,906,110	+		LRK54_RS13010	0.40	+2.1
2,906,110	+		LRK54_RS13010	0.40	+0.6
2,906,110	+		LRK54_RS13010	0.40	-0.8
2,906,110	+		LRK54_RS13010	0.40	+0.4
2,906,110	+		LRK54_RS13010	0.40	+1.1
2,906,111	-		LRK54_RS13010	0.40	+1.1
2,906,111	-		LRK54_RS13010	0.40	+0.3
2,906,111	-		LRK54_RS13010	0.40	+1.5
2,906,111	-		LRK54_RS13010	0.40	-0.2
2,906,111	-		LRK54_RS13010	0.40	+1.6
2,906,112	+		LRK54_RS13010	0.40	-1.1
2,906,326	+		LRK54_RS13010	0.61	+2.6
2,906,407	+		LRK54_RS13010	0.69	+1.0
2,906,408	-		LRK54_RS13010	0.69	+2.1
2,906,456	+		LRK54_RS13010	0.74	+2.1