Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS07625

Experiment: R2A with SpecU metal mix 1 X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS07620 and LRK54_RS07625 overlap by 4 nucleotidesLRK54_RS07625 and LRK54_RS07630 are separated by 424 nucleotides LRK54_RS07620: LRK54_RS07620 - efflux RND transporter periplasmic adaptor subunit, at 1,642,428 to 1,643,480 _RS07620 LRK54_RS07625: LRK54_RS07625 - TolC family protein, at 1,643,477 to 1,644,892 _RS07625 LRK54_RS07630: LRK54_RS07630 - penicillin-binding protein 1C, at 1,645,317 to 1,647,620 _RS07630 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.597 kb on + strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.598 kb on - strand, within LRK54_RS07620at 1642.810 kb on + strand, within LRK54_RS07620at 1642.810 kb on + strand, within LRK54_RS07620at 1642.810 kb on + strand, within LRK54_RS07620at 1642.810 kb on + strand, within LRK54_RS07620at 1642.810 kb on + strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1642.811 kb on - strand, within LRK54_RS07620at 1643.170 kb on + strand, within LRK54_RS07620at 1643.170 kb on + strand, within LRK54_RS07620at 1643.802 kb on + strand, within LRK54_RS07625at 1643.802 kb on + strand, within LRK54_RS07625at 1643.802 kb on + strand, within LRK54_RS07625at 1643.803 kb on - strand, within LRK54_RS07625at 1643.904 kb on + strand, within LRK54_RS07625at 1643.904 kb on + strand, within LRK54_RS07625at 1643.904 kb on + strand, within LRK54_RS07625at 1643.904 kb on + strand, within LRK54_RS07625at 1643.905 kb on - strand, within LRK54_RS07625at 1643.905 kb on - strand, within LRK54_RS07625at 1643.905 kb on - strand, within LRK54_RS07625at 1643.905 kb on - strand, within LRK54_RS07625at 1643.905 kb on - strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.000 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.240 kb on + strand, within LRK54_RS07625at 1644.241 kb on - strand, within LRK54_RS07625at 1644.241 kb on - strand, within LRK54_RS07625at 1644.241 kb on - strand, within LRK54_RS07625at 1644.276 kb on + strand, within LRK54_RS07625at 1644.276 kb on + strand, within LRK54_RS07625at 1644.276 kb on + strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.277 kb on - strand, within LRK54_RS07625at 1644.789 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.917 kb on + strandat 1644.918 kb on - strandat 1644.918 kb on - strandat 1644.918 kb on - strandat 1644.918 kb on - strandat 1644.918 kb on - strandat 1644.928 kb on + strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.018 kb on - strandat 1645.045 kb on + strandat 1645.045 kb on + strandat 1645.046 kb on - strandat 1645.046 kb on - strandat 1645.046 kb on - strandat 1645.046 kb on - strandat 1645.252 kb on - strandat 1645.252 kb on - strandat 1645.258 kb on + strandat 1645.258 kb on + strandat 1645.258 kb on + strandat 1645.258 kb on + strandat 1645.259 kb on - strandat 1645.259 kb on - strandat 1645.318 kb on + strandat 1645.318 kb on + strandat 1645.319 kb on - strandat 1645.320 kb on - strandat 1645.751 kb on + strand, within LRK54_RS07630at 1645.751 kb on + strand, within LRK54_RS07630at 1645.751 kb on + strand, within LRK54_RS07630at 1645.751 kb on + strand, within LRK54_RS07630at 1645.752 kb on - strand, within LRK54_RS07630at 1645.752 kb on - strand, within LRK54_RS07630at 1645.752 kb on - strand, within LRK54_RS07630at 1645.752 kb on - strand, within LRK54_RS07630at 1645.752 kb on - strand, within LRK54_RS07630

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with SpecU metal mix 1 X
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1,642,597 + LRK54_RS07620 0.16 -1.8
1,642,597 + LRK54_RS07620 0.16 -1.7
1,642,597 + LRK54_RS07620 0.16 -1.1
1,642,597 + LRK54_RS07620 0.16 -2.4
1,642,597 + LRK54_RS07620 0.16 -1.1
1,642,597 + LRK54_RS07620 0.16 -0.4
1,642,597 + LRK54_RS07620 0.16 -2.7
1,642,597 + LRK54_RS07620 0.16 -1.7
1,642,597 + LRK54_RS07620 0.16 -0.9
1,642,598 - LRK54_RS07620 0.16 -2.4
1,642,598 - LRK54_RS07620 0.16 -2.9
1,642,598 - LRK54_RS07620 0.16 -1.1
1,642,598 - LRK54_RS07620 0.16 -1.9
1,642,598 - LRK54_RS07620 0.16 +0.5
1,642,598 - LRK54_RS07620 0.16 -0.7
1,642,598 - LRK54_RS07620 0.16 -1.7
1,642,810 + LRK54_RS07620 0.36 -0.3
1,642,810 + LRK54_RS07620 0.36 -2.1
1,642,810 + LRK54_RS07620 0.36 -1.0
1,642,810 + LRK54_RS07620 0.36 -0.5
1,642,810 + LRK54_RS07620 0.36 -1.5
1,642,811 - LRK54_RS07620 0.36 -0.4
1,642,811 - LRK54_RS07620 0.36 -0.4
1,642,811 - LRK54_RS07620 0.36 -0.2
1,642,811 - LRK54_RS07620 0.36 -0.1
1,642,811 - LRK54_RS07620 0.36 -0.1
1,642,811 - LRK54_RS07620 0.36 -2.4
1,642,811 - LRK54_RS07620 0.36 -1.1
1,642,811 - LRK54_RS07620 0.36 -1.1
1,642,811 - LRK54_RS07620 0.36 -2.0
1,642,811 - LRK54_RS07620 0.36 +1.9
1,643,170 + LRK54_RS07620 0.70 -0.1
1,643,170 + LRK54_RS07620 0.70 -1.7
1,643,802 + LRK54_RS07625 0.23 -2.1
1,643,802 + LRK54_RS07625 0.23 -2.9
1,643,802 + LRK54_RS07625 0.23 -2.5
1,643,803 - LRK54_RS07625 0.23 -2.1
1,643,904 + LRK54_RS07625 0.30 -1.9
1,643,904 + LRK54_RS07625 0.30 -0.9
1,643,904 + LRK54_RS07625 0.30 -1.5
1,643,904 + LRK54_RS07625 0.30 -1.1
1,643,905 - LRK54_RS07625 0.30 -1.4
1,643,905 - LRK54_RS07625 0.30 -0.4
1,643,905 - LRK54_RS07625 0.30 +1.3
1,643,905 - LRK54_RS07625 0.30 +0.5
1,643,905 - LRK54_RS07625 0.30 -1.7
1,644,000 + LRK54_RS07625 0.37 -3.1
1,644,000 + LRK54_RS07625 0.37 -2.5
1,644,000 + LRK54_RS07625 0.37 +0.3
1,644,000 + LRK54_RS07625 0.37 -1.6
1,644,000 + LRK54_RS07625 0.37 -2.4
1,644,000 + LRK54_RS07625 0.37 -1.1
1,644,240 + LRK54_RS07625 0.54 -0.6
1,644,240 + LRK54_RS07625 0.54 -1.6
1,644,240 + LRK54_RS07625 0.54 +0.5
1,644,240 + LRK54_RS07625 0.54 -1.4
1,644,240 + LRK54_RS07625 0.54 -1.1
1,644,240 + LRK54_RS07625 0.54 -2.9
1,644,241 - LRK54_RS07625 0.54 -2.2
1,644,241 - LRK54_RS07625 0.54 -2.1
1,644,241 - LRK54_RS07625 0.54 -1.7
1,644,276 + LRK54_RS07625 0.56 -0.6
1,644,276 + LRK54_RS07625 0.56 -1.5
1,644,276 + LRK54_RS07625 0.56 -1.9
1,644,277 - LRK54_RS07625 0.56 -0.5
1,644,277 - LRK54_RS07625 0.56 -1.7
1,644,277 - LRK54_RS07625 0.56 -1.5
1,644,277 - LRK54_RS07625 0.56 -2.5
1,644,277 - LRK54_RS07625 0.56 -1.6
1,644,277 - LRK54_RS07625 0.56 -1.4
1,644,277 - LRK54_RS07625 0.56 -0.1
1,644,277 - LRK54_RS07625 0.56 -0.4
1,644,277 - LRK54_RS07625 0.56 -0.7
1,644,277 - LRK54_RS07625 0.56 -1.9
1,644,277 - LRK54_RS07625 0.56 -1.7
1,644,789 + -2.9
1,644,917 + +1.9
1,644,917 + -1.1
1,644,917 + -0.3
1,644,917 + -0.5
1,644,917 + -0.1
1,644,917 + -1.5
1,644,917 + -2.2
1,644,918 - +0.3
1,644,918 - -0.9
1,644,918 - +0.0
1,644,918 - +0.5
1,644,918 - -0.7
1,644,928 + -0.6
1,645,018 - -0.1
1,645,018 - -0.1
1,645,018 - -1.1
1,645,018 - -0.1
1,645,018 - +0.0
1,645,018 - +1.9
1,645,018 - +0.2
1,645,018 - +0.2
1,645,018 - -0.1
1,645,045 + +0.2
1,645,045 + -0.0
1,645,046 - +1.0
1,645,046 - +0.1
1,645,046 - +1.4
1,645,046 - +1.2
1,645,252 - -0.1
1,645,252 - +1.4
1,645,258 + +1.5
1,645,258 + +1.1
1,645,258 + +0.9
1,645,258 + +0.9
1,645,259 - +1.9
1,645,259 - +3.2
1,645,318 + -0.0
1,645,318 + -0.1
1,645,319 - -0.6
1,645,320 - -0.7
1,645,751 + LRK54_RS07630 0.19 -0.7
1,645,751 + LRK54_RS07630 0.19 +0.3
1,645,751 + LRK54_RS07630 0.19 +0.1
1,645,751 + LRK54_RS07630 0.19 +1.0
1,645,752 - LRK54_RS07630 0.19 +0.0
1,645,752 - LRK54_RS07630 0.19 -0.2
1,645,752 - LRK54_RS07630 0.19 -0.1
1,645,752 - LRK54_RS07630 0.19 -1.5
1,645,752 - LRK54_RS07630 0.19 +1.9

Or see this region's nucleotide sequence