Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3506

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_3505 and Ga0059261_3506 overlap by 4 nucleotidesGa0059261_3506 and Ga0059261_3507 are separated by 85 nucleotides Ga0059261_3505: Ga0059261_3505 - Predicted permeases, at 3,627,233 to 3,628,333 _3505 Ga0059261_3506: Ga0059261_3506 - Predicted permeases, at 3,628,330 to 3,629,529 _3506 Ga0059261_3507: Ga0059261_3507 - His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain, at 3,629,615 to 3,631,579 _3507 Position (kb) 3628 3629 3630Strain fitness (log2 ratio) -1 0 1at 3628.441 kb on - strandat 3628.450 kb on - strand, within Ga0059261_3506at 3628.450 kb on - strand, within Ga0059261_3506at 3628.450 kb on - strand, within Ga0059261_3506at 3628.450 kb on - strand, within Ga0059261_3506at 3629.511 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.593 kb on - strandat 3629.600 kb on - strandat 3629.617 kb on - strandat 3629.617 kb on - strandat 3629.712 kb on - strandat 3629.757 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.769 kb on + strandat 3629.770 kb on - strandat 3629.770 kb on - strandat 3629.770 kb on - strandat 3630.100 kb on + strand, within Ga0059261_3507at 3630.100 kb on + strand, within Ga0059261_3507at 3630.100 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.285 kb on + strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.286 kb on - strand, within Ga0059261_3507at 3630.340 kb on + strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507at 3630.341 kb on - strand, within Ga0059261_3507

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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3,628,441 - -0.1
3,628,450 - Ga0059261_3506 0.10 -0.9
3,628,450 - Ga0059261_3506 0.10 +0.7
3,628,450 - Ga0059261_3506 0.10 +0.1
3,628,450 - Ga0059261_3506 0.10 +1.5
3,629,511 - +1.3
3,629,593 - -0.5
3,629,593 - +0.2
3,629,593 - +0.3
3,629,593 - +0.1
3,629,593 - +0.4
3,629,600 - +0.5
3,629,617 - +0.5
3,629,617 - +1.4
3,629,712 - +0.2
3,629,757 + +0.5
3,629,769 + +1.2
3,629,769 + +0.3
3,629,769 + +1.0
3,629,769 + +0.5
3,629,769 + +0.4
3,629,769 + +0.5
3,629,769 + +1.1
3,629,769 + +0.9
3,629,769 + +0.7
3,629,769 + +0.2
3,629,770 - +0.5
3,629,770 - +0.6
3,629,770 - +0.8
3,630,100 + Ga0059261_3507 0.25 +0.4
3,630,100 + Ga0059261_3507 0.25 +0.2
3,630,100 + Ga0059261_3507 0.25 -0.2
3,630,285 + Ga0059261_3507 0.34 +1.0
3,630,285 + Ga0059261_3507 0.34 +0.4
3,630,285 + Ga0059261_3507 0.34 +0.9
3,630,285 + Ga0059261_3507 0.34 +0.5
3,630,285 + Ga0059261_3507 0.34 +0.2
3,630,285 + Ga0059261_3507 0.34 +0.5
3,630,285 + Ga0059261_3507 0.34 +0.6
3,630,285 + Ga0059261_3507 0.34 +0.5
3,630,286 - Ga0059261_3507 0.34 +0.5
3,630,286 - Ga0059261_3507 0.34 +0.4
3,630,286 - Ga0059261_3507 0.34 +0.1
3,630,286 - Ga0059261_3507 0.34 +0.4
3,630,286 - Ga0059261_3507 0.34 +0.5
3,630,340 + Ga0059261_3507 0.37 +0.5
3,630,341 - Ga0059261_3507 0.37 +1.2
3,630,341 - Ga0059261_3507 0.37 +0.7
3,630,341 - Ga0059261_3507 0.37 -0.2

Or see this region's nucleotide sequence