Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_3505 and Ga0059261_3506 overlap by 4 nucleotides Ga0059261_3506 and Ga0059261_3507 are separated by 85 nucleotides
Ga0059261_3505: Ga0059261_3505 - Predicted permeases, at 3,627,233 to 3,628,333
_3505
Ga0059261_3506: Ga0059261_3506 - Predicted permeases, at 3,628,330 to 3,629,529
_3506
Ga0059261_3507: Ga0059261_3507 - His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain, at 3,629,615 to 3,631,579
_3507
Position (kb)
3628
3629
3630 Strain fitness (log2 ratio)
-1
0
1 at 3628.441 kb on - strand at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3628.450 kb on - strand, within Ga0059261_3506 at 3629.511 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.593 kb on - strand at 3629.600 kb on - strand at 3629.617 kb on - strand at 3629.617 kb on - strand at 3629.712 kb on - strand at 3629.757 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.769 kb on + strand at 3629.770 kb on - strand at 3629.770 kb on - strand at 3629.770 kb on - strand at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.100 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.285 kb on + strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.286 kb on - strand, within Ga0059261_3507 at 3630.340 kb on + strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507 at 3630.341 kb on - strand, within Ga0059261_3507
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,628,441 - -0.1 3,628,450 - Ga0059261_3506 0.10 -0.9 3,628,450 - Ga0059261_3506 0.10 +0.7 3,628,450 - Ga0059261_3506 0.10 +0.1 3,628,450 - Ga0059261_3506 0.10 +1.5 3,629,511 - +1.3 3,629,593 - -0.5 3,629,593 - +0.2 3,629,593 - +0.3 3,629,593 - +0.1 3,629,593 - +0.4 3,629,600 - +0.5 3,629,617 - +0.5 3,629,617 - +1.4 3,629,712 - +0.2 3,629,757 + +0.5 3,629,769 + +1.2 3,629,769 + +0.3 3,629,769 + +1.0 3,629,769 + +0.5 3,629,769 + +0.4 3,629,769 + +0.5 3,629,769 + +1.1 3,629,769 + +0.9 3,629,769 + +0.7 3,629,769 + +0.2 3,629,770 - +0.5 3,629,770 - +0.6 3,629,770 - +0.8 3,630,100 + Ga0059261_3507 0.25 +0.4 3,630,100 + Ga0059261_3507 0.25 +0.2 3,630,100 + Ga0059261_3507 0.25 -0.2 3,630,285 + Ga0059261_3507 0.34 +1.0 3,630,285 + Ga0059261_3507 0.34 +0.4 3,630,285 + Ga0059261_3507 0.34 +0.9 3,630,285 + Ga0059261_3507 0.34 +0.5 3,630,285 + Ga0059261_3507 0.34 +0.2 3,630,285 + Ga0059261_3507 0.34 +0.5 3,630,285 + Ga0059261_3507 0.34 +0.6 3,630,285 + Ga0059261_3507 0.34 +0.5 3,630,286 - Ga0059261_3507 0.34 +0.5 3,630,286 - Ga0059261_3507 0.34 +0.4 3,630,286 - Ga0059261_3507 0.34 +0.1 3,630,286 - Ga0059261_3507 0.34 +0.4 3,630,286 - Ga0059261_3507 0.34 +0.5 3,630,340 + Ga0059261_3507 0.37 +0.5 3,630,341 - Ga0059261_3507 0.37 +1.2 3,630,341 - Ga0059261_3507 0.37 +0.7 3,630,341 - Ga0059261_3507 0.37 -0.2
Or see this region's nucleotide sequence