Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1484

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1483 and Ga0059261_1484 are separated by 76 nucleotidesGa0059261_1484 and Ga0059261_1485 overlap by 8 nucleotidesGa0059261_1485 and Ga0059261_1486 are separated by 0 nucleotides Ga0059261_1483: Ga0059261_1483 - acetyl-CoA acetyltransferases, at 1,566,785 to 1,567,972 _1483 Ga0059261_1484: Ga0059261_1484 - hypothetical protein, at 1,568,049 to 1,568,300 _1484 Ga0059261_1485: Ga0059261_1485 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 1,568,293 to 1,569,039 _1485 Ga0059261_1486: Ga0059261_1486 - NAD-dependent aldehyde dehydrogenases, at 1,569,040 to 1,570,446 _1486 Position (kb) 1568 1569Strain fitness (log2 ratio) -1 0 1 2 3at 1567.461 kb on + strand, within Ga0059261_1483at 1567.462 kb on - strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.512 kb on + strand, within Ga0059261_1483at 1567.513 kb on - strand, within Ga0059261_1483at 1567.513 kb on - strand, within Ga0059261_1483at 1567.513 kb on - strand, within Ga0059261_1483at 1567.513 kb on - strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.540 kb on + strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strandat 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strand, within Ga0059261_1483at 1567.541 kb on - strandat 1567.541 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.600 kb on - strand, within Ga0059261_1483at 1567.810 kb on + strand, within Ga0059261_1483at 1567.810 kb on + strand, within Ga0059261_1483at 1567.811 kb on - strand, within Ga0059261_1483at 1567.811 kb on - strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.812 kb on + strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.813 kb on - strand, within Ga0059261_1483at 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.941 kb on + strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.942 kb on - strandat 1567.946 kb on + strandat 1567.946 kb on + strandat 1567.946 kb on + strandat 1567.946 kb on + strandat 1567.946 kb on + strandat 1567.946 kb on + strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1567.947 kb on - strandat 1568.010 kb on + strandat 1568.011 kb on - strandat 1568.019 kb on + strandat 1568.265 kb on + strand, within Ga0059261_1484at 1568.265 kb on + strand, within Ga0059261_1484at 1568.265 kb on + strand, within Ga0059261_1484at 1568.265 kb on + strand, within Ga0059261_1484at 1568.266 kb on - strand, within Ga0059261_1484at 1568.266 kb on - strand, within Ga0059261_1484at 1568.272 kb on - strand, within Ga0059261_1484at 1568.470 kb on + strand, within Ga0059261_1485at 1568.470 kb on + strand, within Ga0059261_1485at 1568.470 kb on + strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.471 kb on - strand, within Ga0059261_1485at 1568.794 kb on + strand, within Ga0059261_1485at 1568.794 kb on + strand, within Ga0059261_1485at 1568.795 kb on - strand, within Ga0059261_1485at 1568.796 kb on - strand, within Ga0059261_1485at 1569.022 kb on + strandat 1569.022 kb on + strandat 1569.022 kb on + strandat 1569.023 kb on - strandat 1569.023 kb on - strandat 1569.023 kb on - strandat 1569.023 kb on - strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.037 kb on + strandat 1569.038 kb on - strandat 1569.038 kb on - strandat 1569.038 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,567,461 + Ga0059261_1483 0.57 +1.6
1,567,462 - Ga0059261_1483 0.57 -1.3
1,567,512 + Ga0059261_1483 0.61 +0.9
1,567,512 + Ga0059261_1483 0.61 +0.9
1,567,512 + Ga0059261_1483 0.61 +0.5
1,567,512 + Ga0059261_1483 0.61 +0.9
1,567,512 + Ga0059261_1483 0.61 +0.5
1,567,512 + Ga0059261_1483 0.61 +0.2
1,567,512 + Ga0059261_1483 0.61 +1.2
1,567,512 + Ga0059261_1483 0.61 +0.8
1,567,512 + Ga0059261_1483 0.61 -0.0
1,567,513 - Ga0059261_1483 0.61 +0.9
1,567,513 - Ga0059261_1483 0.61 +0.7
1,567,513 - Ga0059261_1483 0.61 +1.0
1,567,513 - Ga0059261_1483 0.61 +0.5
1,567,540 + Ga0059261_1483 0.64 +0.0
1,567,540 + Ga0059261_1483 0.64 -0.2
1,567,540 + Ga0059261_1483 0.64 +0.9
1,567,540 + Ga0059261_1483 0.64 +1.0
1,567,540 + Ga0059261_1483 0.64 +0.3
1,567,540 + Ga0059261_1483 0.64 -0.6
1,567,540 + Ga0059261_1483 0.64 -0.5
1,567,540 + Ga0059261_1483 0.64 +0.6
1,567,541 - Ga0059261_1483 0.64 -0.5
1,567,541 - Ga0059261_1483 0.64 +0.5
1,567,541 - Ga0059261_1483 0.64 +0.4
1,567,541 - Ga0059261_1483 0.64 +1.0
1,567,541 - Ga0059261_1483 0.64 +0.3
1,567,541 - Ga0059261_1483 0.64 +0.5
1,567,541 - -0.7
1,567,541 - Ga0059261_1483 0.64 +0.5
1,567,541 - Ga0059261_1483 0.64 -0.8
1,567,541 - Ga0059261_1483 0.64 +0.6
1,567,541 - +2.2
1,567,541 - Ga0059261_1483 0.64 +1.3
1,567,600 - Ga0059261_1483 0.69 -0.1
1,567,600 - Ga0059261_1483 0.69 +0.4
1,567,600 - Ga0059261_1483 0.69 +0.1
1,567,600 - Ga0059261_1483 0.69 +0.0
1,567,600 - Ga0059261_1483 0.69 +0.3
1,567,600 - Ga0059261_1483 0.69 -0.6
1,567,810 + Ga0059261_1483 0.86 +0.9
1,567,810 + Ga0059261_1483 0.86 -0.2
1,567,811 - Ga0059261_1483 0.86 -0.1
1,567,811 - Ga0059261_1483 0.86 +0.6
1,567,812 + Ga0059261_1483 0.86 +0.0
1,567,812 + Ga0059261_1483 0.86 +0.7
1,567,812 + Ga0059261_1483 0.86 +0.2
1,567,812 + Ga0059261_1483 0.86 +0.6
1,567,812 + Ga0059261_1483 0.86 +0.3
1,567,812 + Ga0059261_1483 0.86 -0.5
1,567,812 + Ga0059261_1483 0.86 +0.3
1,567,812 + Ga0059261_1483 0.86 +0.8
1,567,812 + Ga0059261_1483 0.86 +0.4
1,567,812 + Ga0059261_1483 0.86 +0.4
1,567,812 + Ga0059261_1483 0.86 +0.9
1,567,812 + Ga0059261_1483 0.86 -0.1
1,567,812 + Ga0059261_1483 0.86 +0.2
1,567,813 - Ga0059261_1483 0.87 +1.2
1,567,813 - Ga0059261_1483 0.87 +0.8
1,567,813 - Ga0059261_1483 0.87 +0.3
1,567,813 - Ga0059261_1483 0.87 +0.2
1,567,813 - Ga0059261_1483 0.87 +0.6
1,567,813 - Ga0059261_1483 0.87 +0.2
1,567,813 - Ga0059261_1483 0.87 +0.1
1,567,813 - Ga0059261_1483 0.87 +0.7
1,567,813 - Ga0059261_1483 0.87 -0.9
1,567,813 - Ga0059261_1483 0.87 +0.8
1,567,813 - Ga0059261_1483 0.87 +0.9
1,567,813 - Ga0059261_1483 0.87 +0.5
1,567,813 - Ga0059261_1483 0.87 +0.3
1,567,813 - Ga0059261_1483 0.87 +0.0
1,567,813 - Ga0059261_1483 0.87 -0.3
1,567,813 - Ga0059261_1483 0.87 -1.4
1,567,941 + +0.5
1,567,941 + -0.9
1,567,941 + +0.1
1,567,941 + +0.3
1,567,941 + -0.5
1,567,941 + -0.2
1,567,941 + -0.2
1,567,941 + +0.7
1,567,941 + -0.1
1,567,941 + -0.6
1,567,941 + +2.1
1,567,941 + +0.1
1,567,941 + +0.4
1,567,942 - +0.9
1,567,942 - -0.4
1,567,942 - +0.2
1,567,942 - +0.3
1,567,942 - +0.5
1,567,942 - +0.6
1,567,942 - +0.5
1,567,946 + -0.2
1,567,946 + +0.4
1,567,946 + -0.1
1,567,946 + +1.1
1,567,946 + +0.9
1,567,946 + -0.7
1,567,947 - +0.6
1,567,947 - +0.2
1,567,947 - +0.1
1,567,947 - -0.3
1,567,947 - +1.2
1,567,947 - +0.4
1,567,947 - -0.5
1,567,947 - +0.3
1,567,947 - +0.1
1,567,947 - +0.3
1,568,010 + -0.7
1,568,011 - +0.1
1,568,019 + -0.6
1,568,265 + Ga0059261_1484 0.86 -0.2
1,568,265 + Ga0059261_1484 0.86 -1.6
1,568,265 + Ga0059261_1484 0.86 -0.3
1,568,265 + Ga0059261_1484 0.86 -0.3
1,568,266 - Ga0059261_1484 0.86 +0.1
1,568,266 - Ga0059261_1484 0.86 -0.5
1,568,272 - Ga0059261_1484 0.88 +0.2
1,568,470 + Ga0059261_1485 0.24 -0.3
1,568,470 + Ga0059261_1485 0.24 +0.4
1,568,470 + Ga0059261_1485 0.24 +0.4
1,568,471 - Ga0059261_1485 0.24 +0.2
1,568,471 - Ga0059261_1485 0.24 +0.0
1,568,471 - Ga0059261_1485 0.24 +0.8
1,568,471 - Ga0059261_1485 0.24 -0.1
1,568,471 - Ga0059261_1485 0.24 -0.1
1,568,471 - Ga0059261_1485 0.24 -0.2
1,568,471 - Ga0059261_1485 0.24 -0.7
1,568,471 - Ga0059261_1485 0.24 -1.5
1,568,794 + Ga0059261_1485 0.67 +0.5
1,568,794 + Ga0059261_1485 0.67 +0.0
1,568,795 - Ga0059261_1485 0.67 +0.5
1,568,796 - Ga0059261_1485 0.67 +0.0
1,569,022 + -0.7
1,569,022 + +0.1
1,569,022 + +0.6
1,569,023 - +0.3
1,569,023 - -0.5
1,569,023 - -0.4
1,569,023 - +1.9
1,569,037 + +3.2
1,569,037 + -1.1
1,569,037 + -0.7
1,569,037 + -0.4
1,569,037 + +0.3
1,569,037 + +0.0
1,569,037 + +0.4
1,569,038 - +0.3
1,569,038 - -1.6
1,569,038 - -0.1

Or see this region's nucleotide sequence