Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1287

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1285 and Ga0059261_1286 are separated by 155 nucleotidesGa0059261_1286 and Ga0059261_1287 are separated by 91 nucleotidesGa0059261_1287 and Ga0059261_1288 are separated by 71 nucleotides Ga0059261_1285: Ga0059261_1285 - Uncharacterized conserved protein, at 1,346,625 to 1,346,954 _1285 Ga0059261_1286: Ga0059261_1286 - phasin family protein, at 1,347,110 to 1,347,814 _1286 Ga0059261_1287: Ga0059261_1287 - poly(R)-hydroxyalkanoic acid synthase, class I, at 1,347,906 to 1,349,783 _1287 Ga0059261_1288: Ga0059261_1288 - Aspartate/tyrosine/aromatic aminotransferase, at 1,349,855 to 1,351,060 _1288 Position (kb) 1347 1348 1349 1350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1346.997 kb on - strandat 1347.001 kb on + strandat 1347.249 kb on + strandat 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.250 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286at 1347.343 kb on - strand, within Ga0059261_1286at 1347.647 kb on + strand, within Ga0059261_1286at 1347.648 kb on - strand, within Ga0059261_1286at 1347.648 kb on - strand, within Ga0059261_1286at 1347.794 kb on - strandat 1347.849 kb on + strandat 1347.852 kb on - strandat 1347.922 kb on + strandat 1347.922 kb on + strandat 1347.923 kb on - strandat 1348.105 kb on + strandat 1348.106 kb on - strand, within Ga0059261_1287at 1348.106 kb on - strand, within Ga0059261_1287at 1348.111 kb on + strand, within Ga0059261_1287at 1348.111 kb on + strand, within Ga0059261_1287at 1348.112 kb on - strand, within Ga0059261_1287at 1348.253 kb on + strand, within Ga0059261_1287at 1348.255 kb on + strand, within Ga0059261_1287at 1348.255 kb on + strand, within Ga0059261_1287at 1348.304 kb on + strand, within Ga0059261_1287at 1348.305 kb on - strand, within Ga0059261_1287at 1348.305 kb on - strand, within Ga0059261_1287at 1348.421 kb on + strand, within Ga0059261_1287at 1348.421 kb on + strand, within Ga0059261_1287at 1348.421 kb on + strand, within Ga0059261_1287at 1348.421 kb on + strandat 1348.421 kb on + strand, within Ga0059261_1287at 1348.422 kb on - strand, within Ga0059261_1287at 1348.422 kb on - strand, within Ga0059261_1287at 1348.422 kb on - strand, within Ga0059261_1287at 1348.423 kb on + strand, within Ga0059261_1287at 1348.423 kb on + strand, within Ga0059261_1287at 1348.423 kb on + strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.424 kb on - strand, within Ga0059261_1287at 1348.441 kb on + strand, within Ga0059261_1287at 1348.441 kb on + strand, within Ga0059261_1287at 1348.442 kb on - strand, within Ga0059261_1287at 1348.456 kb on + strand, within Ga0059261_1287at 1348.456 kb on + strand, within Ga0059261_1287at 1348.457 kb on - strand, within Ga0059261_1287at 1348.457 kb on - strand, within Ga0059261_1287at 1348.505 kb on + strand, within Ga0059261_1287at 1348.506 kb on - strand, within Ga0059261_1287at 1348.506 kb on - strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.507 kb on + strand, within Ga0059261_1287at 1348.508 kb on - strand, within Ga0059261_1287at 1348.508 kb on - strandat 1348.508 kb on - strand, within Ga0059261_1287at 1348.508 kb on - strand, within Ga0059261_1287at 1348.508 kb on - strandat 1348.508 kb on - strand, within Ga0059261_1287at 1348.616 kb on + strand, within Ga0059261_1287at 1348.706 kb on - strand, within Ga0059261_1287at 1348.783 kb on + strandat 1348.783 kb on + strand, within Ga0059261_1287at 1348.783 kb on + strand, within Ga0059261_1287at 1348.784 kb on - strand, within Ga0059261_1287at 1348.784 kb on - strandat 1348.906 kb on + strand, within Ga0059261_1287at 1348.906 kb on + strand, within Ga0059261_1287at 1348.907 kb on - strand, within Ga0059261_1287at 1348.907 kb on - strand, within Ga0059261_1287at 1348.975 kb on + strand, within Ga0059261_1287at 1348.976 kb on - strand, within Ga0059261_1287at 1348.976 kb on - strand, within Ga0059261_1287at 1349.033 kb on + strandat 1349.034 kb on - strand, within Ga0059261_1287at 1349.302 kb on + strand, within Ga0059261_1287at 1349.302 kb on + strandat 1349.302 kb on + strand, within Ga0059261_1287at 1349.303 kb on - strand, within Ga0059261_1287at 1349.303 kb on - strand, within Ga0059261_1287at 1349.303 kb on - strand, within Ga0059261_1287at 1349.303 kb on - strand, within Ga0059261_1287at 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.800 kb on + strandat 1349.801 kb on - strandat 1349.802 kb on + strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.851 kb on + strandat 1349.852 kb on - strandat 1349.852 kb on - strandat 1349.852 kb on - strandat 1349.852 kb on - strandat 1349.853 kb on - strandat 1349.894 kb on + strandat 1349.894 kb on + strandat 1349.894 kb on + strandat 1349.895 kb on - strandat 1349.895 kb on - strandat 1349.895 kb on - strandat 1349.895 kb on - strandat 1350.047 kb on + strand, within Ga0059261_1288at 1350.047 kb on + strand, within Ga0059261_1288at 1350.048 kb on - strand, within Ga0059261_1288at 1350.048 kb on - strand, within Ga0059261_1288at 1350.048 kb on - strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.095 kb on + strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.096 kb on - strand, within Ga0059261_1288at 1350.099 kb on - strand, within Ga0059261_1288at 1350.099 kb on - strand, within Ga0059261_1288at 1350.099 kb on - strand, within Ga0059261_1288at 1350.308 kb on + strand, within Ga0059261_1288at 1350.308 kb on + strand, within Ga0059261_1288at 1350.309 kb on - strand, within Ga0059261_1288at 1350.309 kb on - strand, within Ga0059261_1288at 1350.374 kb on + strand, within Ga0059261_1288at 1350.374 kb on + strand, within Ga0059261_1288at 1350.374 kb on + strand, within Ga0059261_1288at 1350.374 kb on + strand, within Ga0059261_1288at 1350.374 kb on + strand, within Ga0059261_1288at 1350.417 kb on - strandat 1350.417 kb on - strand, within Ga0059261_1288at 1350.488 kb on + strand, within Ga0059261_1288at 1350.488 kb on + strand, within Ga0059261_1288at 1350.488 kb on + strand, within Ga0059261_1288at 1350.489 kb on - strand, within Ga0059261_1288at 1350.489 kb on - strand, within Ga0059261_1288at 1350.489 kb on - strand, within Ga0059261_1288at 1350.489 kb on - strand, within Ga0059261_1288at 1350.489 kb on - strand, within Ga0059261_1288at 1350.491 kb on + strand, within Ga0059261_1288at 1350.491 kb on + strand, within Ga0059261_1288at 1350.491 kb on + strand, within Ga0059261_1288at 1350.492 kb on - strandat 1350.492 kb on - strand, within Ga0059261_1288at 1350.492 kb on - strand, within Ga0059261_1288at 1350.492 kb on - strand, within Ga0059261_1288at 1350.492 kb on - strand, within Ga0059261_1288at 1350.492 kb on - strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.575 kb on + strand, within Ga0059261_1288at 1350.576 kb on - strand, within Ga0059261_1288at 1350.576 kb on - strand, within Ga0059261_1288at 1350.653 kb on + strand, within Ga0059261_1288at 1350.654 kb on - strand, within Ga0059261_1288at 1350.663 kb on - strand, within Ga0059261_1288at 1350.663 kb on - strand, within Ga0059261_1288at 1350.746 kb on + strand, within Ga0059261_1288at 1350.746 kb on + strand, within Ga0059261_1288at 1350.746 kb on + strand, within Ga0059261_1288at 1350.747 kb on - strand, within Ga0059261_1288at 1350.747 kb on - strand, within Ga0059261_1288

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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1,346,997 - +0.0
1,346,997 - -0.6
1,346,997 - +0.1
1,346,997 - -0.6
1,346,997 - +1.1
1,347,001 + -2.8
1,347,249 + -0.8
1,347,250 - Ga0059261_1286 0.20 -1.0
1,347,250 - Ga0059261_1286 0.20 -0.8
1,347,250 - Ga0059261_1286 0.20 +0.3
1,347,250 - Ga0059261_1286 0.20 -0.9
1,347,250 - Ga0059261_1286 0.20 -1.2
1,347,250 - Ga0059261_1286 0.20 -1.3
1,347,250 - Ga0059261_1286 0.20 -0.8
1,347,250 - Ga0059261_1286 0.20 -0.4
1,347,343 - Ga0059261_1286 0.33 -0.6
1,347,343 - Ga0059261_1286 0.33 -0.1
1,347,647 + Ga0059261_1286 0.76 -0.7
1,347,648 - Ga0059261_1286 0.76 +0.6
1,347,648 - Ga0059261_1286 0.76 -0.1
1,347,794 - +1.2
1,347,849 + -0.4
1,347,852 - +0.8
1,347,922 + +0.1
1,347,922 + +1.1
1,347,923 - +0.6
1,348,105 + +1.6
1,348,106 - Ga0059261_1287 0.11 +2.0
1,348,106 - Ga0059261_1287 0.11 +2.0
1,348,111 + Ga0059261_1287 0.11 +0.9
1,348,111 + Ga0059261_1287 0.11 +1.4
1,348,112 - Ga0059261_1287 0.11 +2.0
1,348,253 + Ga0059261_1287 0.18 +2.3
1,348,255 + Ga0059261_1287 0.19 +2.0
1,348,255 + Ga0059261_1287 0.19 +1.6
1,348,304 + Ga0059261_1287 0.21 +0.7
1,348,305 - Ga0059261_1287 0.21 +2.7
1,348,305 - Ga0059261_1287 0.21 +1.4
1,348,421 + Ga0059261_1287 0.27 +0.7
1,348,421 + Ga0059261_1287 0.27 +1.2
1,348,421 + Ga0059261_1287 0.27 +0.5
1,348,421 + +0.6
1,348,421 + Ga0059261_1287 0.27 +0.8
1,348,422 - Ga0059261_1287 0.27 +0.3
1,348,422 - Ga0059261_1287 0.27 +0.2
1,348,422 - Ga0059261_1287 0.27 +0.3
1,348,423 + Ga0059261_1287 0.28 -0.4
1,348,423 + Ga0059261_1287 0.28 +1.4
1,348,423 + Ga0059261_1287 0.28 +0.9
1,348,424 - Ga0059261_1287 0.28 +1.7
1,348,424 - Ga0059261_1287 0.28 +1.5
1,348,424 - Ga0059261_1287 0.28 +0.7
1,348,424 - Ga0059261_1287 0.28 +1.4
1,348,424 - Ga0059261_1287 0.28 +0.2
1,348,424 - Ga0059261_1287 0.28 +1.6
1,348,424 - Ga0059261_1287 0.28 +0.8
1,348,424 - Ga0059261_1287 0.28 +0.6
1,348,424 - Ga0059261_1287 0.28 -0.6
1,348,424 - Ga0059261_1287 0.28 +0.6
1,348,441 + Ga0059261_1287 0.28 +1.2
1,348,441 + Ga0059261_1287 0.28 +0.2
1,348,442 - Ga0059261_1287 0.29 +1.3
1,348,456 + Ga0059261_1287 0.29 +1.0
1,348,456 + Ga0059261_1287 0.29 +0.3
1,348,457 - Ga0059261_1287 0.29 +0.8
1,348,457 - Ga0059261_1287 0.29 +2.0
1,348,505 + Ga0059261_1287 0.32 +0.2
1,348,506 - Ga0059261_1287 0.32 +0.4
1,348,506 - Ga0059261_1287 0.32 +1.1
1,348,507 + Ga0059261_1287 0.32 +0.1
1,348,507 + Ga0059261_1287 0.32 +0.6
1,348,507 + Ga0059261_1287 0.32 +1.0
1,348,507 + Ga0059261_1287 0.32 +1.7
1,348,507 + Ga0059261_1287 0.32 +0.8
1,348,507 + Ga0059261_1287 0.32 +1.0
1,348,507 + Ga0059261_1287 0.32 +0.5
1,348,508 - Ga0059261_1287 0.32 -0.4
1,348,508 - +1.6
1,348,508 - Ga0059261_1287 0.32 +1.0
1,348,508 - Ga0059261_1287 0.32 +0.2
1,348,508 - +2.6
1,348,508 - Ga0059261_1287 0.32 -0.3
1,348,616 + Ga0059261_1287 0.38 +0.3
1,348,706 - Ga0059261_1287 0.43 +1.6
1,348,783 + +1.1
1,348,783 + Ga0059261_1287 0.47 +1.1
1,348,783 + Ga0059261_1287 0.47 +0.2
1,348,784 - Ga0059261_1287 0.47 +0.6
1,348,784 - -0.4
1,348,906 + Ga0059261_1287 0.53 +0.7
1,348,906 + Ga0059261_1287 0.53 +0.3
1,348,907 - Ga0059261_1287 0.53 +0.7
1,348,907 - Ga0059261_1287 0.53 +0.7
1,348,975 + Ga0059261_1287 0.57 +0.1
1,348,976 - Ga0059261_1287 0.57 +0.7
1,348,976 - Ga0059261_1287 0.57 +0.4
1,349,033 + +0.8
1,349,034 - Ga0059261_1287 0.60 +1.4
1,349,302 + Ga0059261_1287 0.74 +0.9
1,349,302 + +2.9
1,349,302 + Ga0059261_1287 0.74 +0.1
1,349,303 - Ga0059261_1287 0.74 +0.4
1,349,303 - Ga0059261_1287 0.74 +0.3
1,349,303 - Ga0059261_1287 0.74 +0.4
1,349,303 - Ga0059261_1287 0.74 +1.0
1,349,800 + +0.1
1,349,800 + -0.8
1,349,800 + +0.3
1,349,800 + +0.5
1,349,800 + +1.0
1,349,800 + +0.4
1,349,800 + -0.3
1,349,800 + +0.1
1,349,800 + +0.3
1,349,800 + -0.3
1,349,800 + +0.8
1,349,800 + +0.3
1,349,800 + +0.4
1,349,800 + +0.9
1,349,801 - +0.3
1,349,802 + +0.0
1,349,851 + -0.4
1,349,851 + -0.3
1,349,851 + +0.3
1,349,851 + +0.1
1,349,852 - -0.9
1,349,852 - -0.9
1,349,852 - -1.6
1,349,852 - -2.2
1,349,853 - -0.4
1,349,894 + -0.9
1,349,894 + -1.3
1,349,894 + -1.9
1,349,895 - -1.4
1,349,895 - -1.5
1,349,895 - -1.9
1,349,895 - -0.0
1,350,047 + Ga0059261_1288 0.16 -0.9
1,350,047 + Ga0059261_1288 0.16 -0.7
1,350,048 - Ga0059261_1288 0.16 -2.3
1,350,048 - Ga0059261_1288 0.16 -2.4
1,350,048 - Ga0059261_1288 0.16 -1.9
1,350,095 + Ga0059261_1288 0.20 -1.5
1,350,095 + Ga0059261_1288 0.20 -1.7
1,350,095 + Ga0059261_1288 0.20 -0.8
1,350,095 + Ga0059261_1288 0.20 -1.3
1,350,095 + Ga0059261_1288 0.20 -1.8
1,350,095 + Ga0059261_1288 0.20 -2.9
1,350,095 + Ga0059261_1288 0.20 -1.5
1,350,095 + Ga0059261_1288 0.20 -1.8
1,350,095 + Ga0059261_1288 0.20 -1.3
1,350,095 + Ga0059261_1288 0.20 -1.2
1,350,095 + Ga0059261_1288 0.20 -2.3
1,350,095 + Ga0059261_1288 0.20 -1.1
1,350,096 - Ga0059261_1288 0.20 -1.3
1,350,096 - Ga0059261_1288 0.20 -1.9
1,350,096 - Ga0059261_1288 0.20 -2.8
1,350,096 - Ga0059261_1288 0.20 -1.6
1,350,096 - Ga0059261_1288 0.20 -1.1
1,350,096 - Ga0059261_1288 0.20 -1.7
1,350,096 - Ga0059261_1288 0.20 -1.8
1,350,096 - Ga0059261_1288 0.20 -2.2
1,350,096 - Ga0059261_1288 0.20 -2.7
1,350,096 - Ga0059261_1288 0.20 -0.8
1,350,096 - Ga0059261_1288 0.20 -1.7
1,350,096 - Ga0059261_1288 0.20 +0.6
1,350,096 - Ga0059261_1288 0.20 -0.6
1,350,096 - Ga0059261_1288 0.20 -1.3
1,350,099 - Ga0059261_1288 0.20 -2.6
1,350,099 - Ga0059261_1288 0.20 -1.6
1,350,099 - Ga0059261_1288 0.20 -0.8
1,350,308 + Ga0059261_1288 0.38 -1.6
1,350,308 + Ga0059261_1288 0.38 -1.4
1,350,309 - Ga0059261_1288 0.38 -1.8
1,350,309 - Ga0059261_1288 0.38 -1.7
1,350,374 + Ga0059261_1288 0.43 -1.8
1,350,374 + Ga0059261_1288 0.43 -0.8
1,350,374 + Ga0059261_1288 0.43 -1.4
1,350,374 + Ga0059261_1288 0.43 -2.4
1,350,374 + Ga0059261_1288 0.43 -1.5
1,350,417 - -0.0
1,350,417 - Ga0059261_1288 0.47 +0.4
1,350,488 + Ga0059261_1288 0.52 -1.4
1,350,488 + Ga0059261_1288 0.52 -0.6
1,350,488 + Ga0059261_1288 0.52 -1.3
1,350,489 - Ga0059261_1288 0.53 -1.4
1,350,489 - Ga0059261_1288 0.53 -0.7
1,350,489 - Ga0059261_1288 0.53 -1.0
1,350,489 - Ga0059261_1288 0.53 -2.1
1,350,489 - Ga0059261_1288 0.53 -0.4
1,350,491 + Ga0059261_1288 0.53 -1.2
1,350,491 + Ga0059261_1288 0.53 -1.8
1,350,491 + Ga0059261_1288 0.53 -0.9
1,350,492 - -0.4
1,350,492 - Ga0059261_1288 0.53 -0.7
1,350,492 - Ga0059261_1288 0.53 +1.0
1,350,492 - Ga0059261_1288 0.53 -1.2
1,350,492 - Ga0059261_1288 0.53 -0.8
1,350,492 - Ga0059261_1288 0.53 -0.3
1,350,575 + Ga0059261_1288 0.60 -0.6
1,350,575 + Ga0059261_1288 0.60 -1.4
1,350,575 + Ga0059261_1288 0.60 -1.4
1,350,575 + Ga0059261_1288 0.60 -0.9
1,350,575 + Ga0059261_1288 0.60 -2.0
1,350,575 + Ga0059261_1288 0.60 -2.1
1,350,575 + Ga0059261_1288 0.60 -0.8
1,350,575 + Ga0059261_1288 0.60 -1.1
1,350,575 + Ga0059261_1288 0.60 -1.9
1,350,576 - Ga0059261_1288 0.60 -0.4
1,350,576 - Ga0059261_1288 0.60 -0.8
1,350,653 + Ga0059261_1288 0.66 -1.2
1,350,654 - Ga0059261_1288 0.66 -1.0
1,350,663 - Ga0059261_1288 0.67 -2.9
1,350,663 - Ga0059261_1288 0.67 -0.7
1,350,746 + Ga0059261_1288 0.74 -2.1
1,350,746 + Ga0059261_1288 0.74 -2.1
1,350,746 + Ga0059261_1288 0.74 -0.6
1,350,747 - Ga0059261_1288 0.74 -0.8
1,350,747 - Ga0059261_1288 0.74 -1.9

Or see this region's nucleotide sequence