Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0492 and Ga0059261_0493 are separated by 83 nucleotides Ga0059261_0493 and Ga0059261_0494 are separated by 20 nucleotides Ga0059261_0494 and Ga0059261_0495 overlap by 1 nucleotides
Ga0059261_0492: Ga0059261_0492 - Predicted phosphatase, at 485,500 to 486,855
_0492
Ga0059261_0493: Ga0059261_0493 - hypothetical protein, at 486,939 to 487,226
_0493
Ga0059261_0494: Ga0059261_0494 - ABC-type antimicrobial peptide transport system, ATPase component, at 487,247 to 487,903
_0494
Ga0059261_0495: Ga0059261_0495 - ABC-type transport system, involved in lipoprotein release, permease component, at 487,903 to 489,186
_0495
Position (kb) 486
487
488 Strain fitness (log2 ratio) -2
-1
0
1
2 at 485.954 kb on + strand, within Ga0059261_0492 at 486.018 kb on - strand, within Ga0059261_0492 at 486.186 kb on - strand, within Ga0059261_0492 at 486.186 kb on - strand, within Ga0059261_0492 at 486.420 kb on - strand, within Ga0059261_0492 at 486.452 kb on + strand, within Ga0059261_0492 at 486.452 kb on + strand, within Ga0059261_0492 at 486.452 kb on + strand, within Ga0059261_0492 at 486.452 kb on + strand, within Ga0059261_0492 at 486.452 kb on + strand, within Ga0059261_0492 at 486.453 kb on - strand, within Ga0059261_0492 at 486.453 kb on - strand, within Ga0059261_0492 at 486.453 kb on - strand, within Ga0059261_0492 at 486.506 kb on + strand, within Ga0059261_0492 at 486.506 kb on + strand, within Ga0059261_0492 at 486.507 kb on - strand, within Ga0059261_0492 at 486.613 kb on + strand, within Ga0059261_0492 at 486.614 kb on - strand, within Ga0059261_0492 at 486.624 kb on + strand, within Ga0059261_0492 at 486.692 kb on + strand, within Ga0059261_0492 at 486.692 kb on + strand, within Ga0059261_0492 at 486.693 kb on - strand, within Ga0059261_0492 at 486.693 kb on - strand, within Ga0059261_0492 at 486.693 kb on - strand, within Ga0059261_0492 at 486.693 kb on - strand, within Ga0059261_0492 at 486.919 kb on - strand at 487.162 kb on + strand, within Ga0059261_0493 at 487.162 kb on + strand, within Ga0059261_0493 at 487.209 kb on + strand at 487.209 kb on + strand at 487.209 kb on + strand at 487.209 kb on + strand at 487.209 kb on + strand at 487.209 kb on + strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.210 kb on - strand at 487.224 kb on + strand at 487.244 kb on + strand at 487.244 kb on + strand at 487.244 kb on + strand at 487.244 kb on + strand at 487.244 kb on + strand at 487.244 kb on + strand at 487.245 kb on - strand at 487.245 kb on - strand at 487.245 kb on - strand at 487.245 kb on - strand at 487.257 kb on + strand at 487.257 kb on + strand at 487.258 kb on - strand at 487.258 kb on - strand at 487.258 kb on - strand at 487.271 kb on - strand at 487.271 kb on - strand at 487.542 kb on + strand, within Ga0059261_0494 at 487.543 kb on - strand, within Ga0059261_0494 at 487.663 kb on + strand, within Ga0059261_0494 at 487.924 kb on + strand at 487.924 kb on + strand at 487.924 kb on + strand at 487.924 kb on + strand at 487.925 kb on - strand at 487.925 kb on - strand at 487.925 kb on - strand at 487.925 kb on - strand at 487.925 kb on - strand at 487.925 kb on - strand at 487.926 kb on + strand at 487.926 kb on + strand at 487.927 kb on - strand at 487.927 kb on - strand at 487.927 kb on - strand at 488.110 kb on + strand, within Ga0059261_0495 at 488.110 kb on + strand at 488.110 kb on + strand, within Ga0059261_0495 at 488.110 kb on + strand, within Ga0059261_0495 at 488.111 kb on - strand, within Ga0059261_0495 at 488.111 kb on - strand, within Ga0059261_0495 at 488.111 kb on - strand, within Ga0059261_0495 at 488.111 kb on - strand, within Ga0059261_0495 at 488.111 kb on - strand, within Ga0059261_0495 at 488.137 kb on - strand, within Ga0059261_0495
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 485,954 + Ga0059261_0492 0.33 +1.1 486,018 - Ga0059261_0492 0.38 -0.6 486,186 - Ga0059261_0492 0.51 +0.0 486,186 - Ga0059261_0492 0.51 +0.1 486,420 - Ga0059261_0492 0.68 -0.6 486,452 + Ga0059261_0492 0.70 +0.7 486,452 + Ga0059261_0492 0.70 +0.1 486,452 + Ga0059261_0492 0.70 +1.7 486,452 + Ga0059261_0492 0.70 -2.2 486,452 + Ga0059261_0492 0.70 -0.4 486,453 - Ga0059261_0492 0.70 +0.4 486,453 - Ga0059261_0492 0.70 -0.3 486,453 - Ga0059261_0492 0.70 -1.7 486,506 + Ga0059261_0492 0.74 -0.1 486,506 + Ga0059261_0492 0.74 -0.8 486,507 - Ga0059261_0492 0.74 -0.6 486,613 + Ga0059261_0492 0.82 +0.5 486,614 - Ga0059261_0492 0.82 -0.7 486,624 + Ga0059261_0492 0.83 -0.0 486,692 + Ga0059261_0492 0.88 -0.0 486,692 + Ga0059261_0492 0.88 +0.4 486,693 - Ga0059261_0492 0.88 -0.1 486,693 - Ga0059261_0492 0.88 +0.4 486,693 - Ga0059261_0492 0.88 -0.6 486,693 - Ga0059261_0492 0.88 +0.4 486,919 - +0.2 487,162 + Ga0059261_0493 0.77 +0.8 487,162 + Ga0059261_0493 0.77 +0.2 487,209 + +0.1 487,209 + +0.8 487,209 + +0.0 487,209 + +0.6 487,209 + -0.5 487,209 + -0.2 487,210 - +0.3 487,210 - -0.9 487,210 - +0.1 487,210 - +0.2 487,210 - +0.5 487,210 - -0.2 487,210 - +1.3 487,210 - -0.2 487,224 + +1.2 487,244 + -0.3 487,244 + +0.3 487,244 + +0.0 487,244 + +0.7 487,244 + +0.7 487,244 + +0.0 487,245 - -0.1 487,245 - -1.3 487,245 - -0.2 487,245 - +0.1 487,257 + +0.1 487,257 + +0.1 487,258 - +2.1 487,258 - -0.6 487,258 - -0.6 487,271 - -0.0 487,271 - -0.8 487,542 + Ga0059261_0494 0.45 -0.9 487,543 - Ga0059261_0494 0.45 +0.3 487,663 + Ga0059261_0494 0.63 +0.1 487,924 + -0.2 487,924 + -0.1 487,924 + +0.6 487,924 + -0.3 487,925 - -0.3 487,925 - +0.9 487,925 - +1.1 487,925 - -0.3 487,925 - -0.4 487,925 - -0.3 487,926 + -0.0 487,926 + +0.4 487,927 - +0.0 487,927 - -0.2 487,927 - -0.4 488,110 + Ga0059261_0495 0.16 -0.4 488,110 + +2.1 488,110 + Ga0059261_0495 0.16 -0.5 488,110 + Ga0059261_0495 0.16 -0.4 488,111 - Ga0059261_0495 0.16 +0.8 488,111 - Ga0059261_0495 0.16 +1.4 488,111 - Ga0059261_0495 0.16 +0.2 488,111 - Ga0059261_0495 0.16 -0.0 488,111 - Ga0059261_0495 0.16 +0.3 488,137 - Ga0059261_0495 0.18 +0.9
Or see this region's nucleotide sequence