Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00334

Experiment: PYE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00332 and CCNA_00333 are separated by 20 nucleotidesCCNA_00333 and CCNA_00334 are separated by 62 nucleotidesCCNA_00334 and CCNA_00335 are separated by 37 nucleotidesCCNA_00335 and CCNA_00336 are separated by 10 nucleotides CCNA_00332: CCNA_00332 - molybdenum transport system permease protein modB, at 343,435 to 344,109 _00332 CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957 _00333 CCNA_00334: CCNA_00334 - hypothetical protein, at 345,020 to 345,580 _00334 CCNA_00335: CCNA_00335 - putative secreted protein, at 345,618 to 346,055 _00335 CCNA_00336: CCNA_00336 - lignostilbene-alpha,beta-dioxygenase, at 346,066 to 347,517 _00336 Position (kb) 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.032 kb on + strand, within CCNA_00332at 344.034 kb on - strand, within CCNA_00332at 344.074 kb on - strandat 344.148 kb on + strandat 344.163 kb on - strandat 344.172 kb on + strandat 344.189 kb on - strandat 344.202 kb on - strandat 344.210 kb on - strandat 344.250 kb on + strand, within CCNA_00333at 344.260 kb on + strand, within CCNA_00333at 344.301 kb on - strandat 344.344 kb on - strand, within CCNA_00333at 344.361 kb on - strand, within CCNA_00333at 344.363 kb on - strand, within CCNA_00333at 344.366 kb on + strand, within CCNA_00333at 344.373 kb on + strand, within CCNA_00333at 344.374 kb on - strand, within CCNA_00333at 344.394 kb on + strand, within CCNA_00333at 344.454 kb on + strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.472 kb on - strand, within CCNA_00333at 344.497 kb on - strand, within CCNA_00333at 344.507 kb on - strand, within CCNA_00333at 344.539 kb on + strand, within CCNA_00333at 344.545 kb on - strand, within CCNA_00333at 344.599 kb on + strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.627 kb on - strand, within CCNA_00333at 344.633 kb on - strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.650 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.656 kb on + strand, within CCNA_00333at 344.658 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.664 kb on - strand, within CCNA_00333at 344.674 kb on + strand, within CCNA_00333at 344.708 kb on - strand, within CCNA_00333at 344.738 kb on + strand, within CCNA_00333at 344.746 kb on + strand, within CCNA_00333at 344.746 kb on - strand, within CCNA_00333at 344.791 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.838 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.859 kb on + strand, within CCNA_00333at 344.955 kb on - strandat 344.955 kb on - strandat 344.967 kb on - strandat 344.968 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.010 kb on - strandat 345.069 kb on - strandat 345.081 kb on - strand, within CCNA_00334at 345.081 kb on - strandat 345.186 kb on + strand, within CCNA_00334at 345.202 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.223 kb on + strand, within CCNA_00334at 345.231 kb on - strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.240 kb on + strand, within CCNA_00334at 345.245 kb on + strand, within CCNA_00334at 345.253 kb on - strand, within CCNA_00334at 345.254 kb on + strand, within CCNA_00334at 345.260 kb on - strand, within CCNA_00334at 345.267 kb on + strand, within CCNA_00334at 345.280 kb on - strand, within CCNA_00334at 345.292 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.299 kb on + strand, within CCNA_00334at 345.300 kb on - strand, within CCNA_00334at 345.302 kb on - strand, within CCNA_00334at 345.307 kb on - strand, within CCNA_00334at 345.312 kb on - strand, within CCNA_00334at 345.317 kb on + strand, within CCNA_00334at 345.334 kb on + strand, within CCNA_00334at 345.364 kb on + strand, within CCNA_00334at 345.370 kb on - strand, within CCNA_00334at 345.396 kb on + strand, within CCNA_00334at 345.416 kb on + strand, within CCNA_00334at 345.446 kb on + strand, within CCNA_00334at 345.454 kb on - strand, within CCNA_00334at 345.469 kb on + strand, within CCNA_00334at 345.477 kb on - strand, within CCNA_00334at 345.481 kb on + strand, within CCNA_00334at 345.487 kb on + strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.496 kb on - strand, within CCNA_00334at 345.517 kb on + strand, within CCNA_00334at 345.530 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.556 kb on + strandat 345.564 kb on - strandat 345.569 kb on + strandat 345.577 kb on - strandat 345.577 kb on - strandat 345.580 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.581 kb on + strandat 345.588 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.589 kb on - strandat 345.624 kb on - strandat 345.639 kb on + strandat 345.648 kb on - strandat 345.648 kb on - strandat 345.708 kb on + strand, within CCNA_00335at 345.715 kb on - strand, within CCNA_00335at 345.716 kb on - strand, within CCNA_00335at 345.718 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.725 kb on + strand, within CCNA_00335at 345.731 kb on + strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.733 kb on - strand, within CCNA_00335at 345.744 kb on - strand, within CCNA_00335at 345.759 kb on + strand, within CCNA_00335at 345.776 kb on + strand, within CCNA_00335at 345.778 kb on + strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.784 kb on - strand, within CCNA_00335at 345.814 kb on - strand, within CCNA_00335at 345.820 kb on - strand, within CCNA_00335at 345.855 kb on - strand, within CCNA_00335at 345.866 kb on + strand, within CCNA_00335at 345.874 kb on - strand, within CCNA_00335at 345.876 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.924 kb on + strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335at 345.952 kb on - strand, within CCNA_00335at 346.039 kb on + strandat 346.040 kb on - strandat 346.063 kb on + strandat 346.063 kb on + strandat 346.064 kb on + strandat 346.071 kb on - strandat 346.096 kb on + strandat 346.096 kb on + strandat 346.096 kb on + strandat 346.099 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.104 kb on - strandat 346.134 kb on + strandat 346.142 kb on - strandat 346.195 kb on + strandat 346.245 kb on - strand, within CCNA_00336at 346.254 kb on + strand, within CCNA_00336at 346.254 kb on + strand, within CCNA_00336at 346.302 kb on - strand, within CCNA_00336at 346.327 kb on + strand, within CCNA_00336at 346.364 kb on - strand, within CCNA_00336at 346.393 kb on - strand, within CCNA_00336at 346.401 kb on + strand, within CCNA_00336at 346.427 kb on + strand, within CCNA_00336at 346.435 kb on - strand, within CCNA_00336at 346.453 kb on - strand, within CCNA_00336at 346.453 kb on - strand, within CCNA_00336at 346.460 kb on - strand, within CCNA_00336at 346.462 kb on + strand, within CCNA_00336at 346.470 kb on - strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.524 kb on + strand, within CCNA_00336at 346.544 kb on - strand, within CCNA_00336

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE
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344,032 + CCNA_00332 0.88 +1.4
344,034 - CCNA_00332 0.89 -0.5
344,074 - -1.2
344,148 + -2.5
344,163 - -1.9
344,172 + -0.2
344,189 - +0.5
344,202 - +0.3
344,210 - -1.0
344,250 + CCNA_00333 0.14 +0.6
344,260 + CCNA_00333 0.16 -0.9
344,301 - +1.0
344,344 - CCNA_00333 0.26 +1.3
344,361 - CCNA_00333 0.28 -0.6
344,363 - CCNA_00333 0.28 -1.8
344,366 + CCNA_00333 0.29 -1.0
344,373 + CCNA_00333 0.29 -2.3
344,374 - CCNA_00333 0.29 -0.8
344,394 + CCNA_00333 0.32 -0.7
344,454 + CCNA_00333 0.39 -0.2
344,472 - CCNA_00333 0.41 +0.5
344,472 - CCNA_00333 0.41 -0.4
344,497 - CCNA_00333 0.44 +0.2
344,507 - CCNA_00333 0.46 +1.0
344,539 + CCNA_00333 0.49 -1.1
344,545 - CCNA_00333 0.50 +0.5
344,599 + CCNA_00333 0.57 +0.1
344,627 - CCNA_00333 0.60 -0.0
344,627 - CCNA_00333 0.60 -2.9
344,633 - CCNA_00333 0.61 +0.4
344,650 + CCNA_00333 0.63 -2.0
344,650 + CCNA_00333 0.63 -1.5
344,656 + CCNA_00333 0.64 -3.1
344,656 + CCNA_00333 0.64 +0.3
344,658 - CCNA_00333 0.64 -0.0
344,664 - CCNA_00333 0.64 -0.0
344,664 - CCNA_00333 0.64 -0.3
344,664 - CCNA_00333 0.64 -1.4
344,674 + CCNA_00333 0.66 -2.7
344,708 - CCNA_00333 0.70 +0.1
344,738 + CCNA_00333 0.73 -1.1
344,746 + CCNA_00333 0.74 -1.2
344,746 - CCNA_00333 0.74 -0.9
344,791 + CCNA_00333 0.80 -0.7
344,838 + CCNA_00333 0.86 -1.2
344,838 + CCNA_00333 0.86 +0.4
344,838 + CCNA_00333 0.86 +0.1
344,859 + CCNA_00333 0.88 -1.9
344,859 + CCNA_00333 0.88 -0.8
344,955 - -0.7
344,955 - +0.0
344,967 - -0.3
344,968 - +1.1
345,010 - -0.5
345,010 - +0.6
345,010 - -1.7
345,069 - -2.1
345,081 - CCNA_00334 0.11 -1.6
345,081 - +1.2
345,186 + CCNA_00334 0.30 +1.2
345,202 + CCNA_00334 0.32 +1.2
345,223 + CCNA_00334 0.36 -1.2
345,223 + CCNA_00334 0.36 +0.1
345,231 - CCNA_00334 0.38 -1.5
345,240 + CCNA_00334 0.39 -0.2
345,240 + CCNA_00334 0.39 +1.7
345,245 + CCNA_00334 0.40 +0.5
345,253 - CCNA_00334 0.42 -0.2
345,254 + CCNA_00334 0.42 +0.8
345,260 - CCNA_00334 0.43 -2.1
345,267 + CCNA_00334 0.44 -1.0
345,280 - CCNA_00334 0.46 -1.0
345,292 + CCNA_00334 0.48 -0.4
345,299 + CCNA_00334 0.50 -0.4
345,299 + CCNA_00334 0.50 -0.2
345,299 + CCNA_00334 0.50 -1.2
345,300 - CCNA_00334 0.50 -2.8
345,302 - CCNA_00334 0.50 -0.8
345,307 - CCNA_00334 0.51 -1.1
345,312 - CCNA_00334 0.52 -2.2
345,317 + CCNA_00334 0.53 -0.0
345,334 + CCNA_00334 0.56 -1.5
345,364 + CCNA_00334 0.61 -1.6
345,370 - CCNA_00334 0.62 +0.4
345,396 + CCNA_00334 0.67 -1.3
345,416 + CCNA_00334 0.71 -0.0
345,446 + CCNA_00334 0.76 -1.9
345,454 - CCNA_00334 0.77 +0.6
345,469 + CCNA_00334 0.80 -1.2
345,477 - CCNA_00334 0.81 -0.4
345,481 + CCNA_00334 0.82 -1.4
345,487 + CCNA_00334 0.83 -0.4
345,496 - CCNA_00334 0.85 +0.8
345,496 - CCNA_00334 0.85 -1.4
345,496 - CCNA_00334 0.85 -0.7
345,496 - CCNA_00334 0.85 -0.9
345,496 - CCNA_00334 0.85 -1.7
345,517 + CCNA_00334 0.89 +0.0
345,530 + +0.3
345,556 + +0.6
345,556 + -0.5
345,556 + -2.2
345,556 + -1.7
345,564 - +0.3
345,569 + -0.0
345,577 - +0.0
345,577 - -0.8
345,580 + -1.9
345,581 + -0.1
345,581 + -1.9
345,581 + +0.4
345,588 - -1.4
345,589 - -0.4
345,589 - -0.5
345,589 - +0.6
345,624 - -1.0
345,639 + -0.2
345,648 - -0.3
345,648 - -0.3
345,708 + CCNA_00335 0.21 +0.2
345,715 - CCNA_00335 0.22 -1.3
345,716 - CCNA_00335 0.22 -1.9
345,718 + CCNA_00335 0.23 +0.7
345,725 + CCNA_00335 0.24 +1.3
345,725 + CCNA_00335 0.24 +0.6
345,731 + CCNA_00335 0.26 -1.2
345,733 - CCNA_00335 0.26 +0.2
345,733 - CCNA_00335 0.26 +0.5
345,733 - CCNA_00335 0.26 -0.2
345,744 - CCNA_00335 0.29 -2.4
345,759 + CCNA_00335 0.32 -1.0
345,776 + CCNA_00335 0.36 -1.7
345,778 + CCNA_00335 0.37 +0.6
345,784 - CCNA_00335 0.38 -0.4
345,784 - CCNA_00335 0.38 -0.8
345,814 - CCNA_00335 0.45 -0.6
345,820 - CCNA_00335 0.46 -0.7
345,855 - CCNA_00335 0.54 +1.2
345,866 + CCNA_00335 0.57 -0.0
345,874 - CCNA_00335 0.58 -0.0
345,876 + CCNA_00335 0.59 -0.9
345,924 + CCNA_00335 0.70 -0.1
345,924 + CCNA_00335 0.70 -2.2
345,952 - CCNA_00335 0.76 -0.4
345,952 - CCNA_00335 0.76 -2.6
346,039 + -1.8
346,040 - -1.2
346,063 + -0.5
346,063 + -1.6
346,064 + -0.6
346,071 - -1.7
346,096 + -1.3
346,096 + +0.3
346,096 + -1.9
346,099 - +0.7
346,104 - +0.5
346,104 - -1.4
346,104 - -1.0
346,104 - -2.5
346,104 - -0.2
346,134 + +0.4
346,142 - +0.1
346,195 + -1.3
346,245 - CCNA_00336 0.12 -1.2
346,254 + CCNA_00336 0.13 +0.2
346,254 + CCNA_00336 0.13 +1.8
346,302 - CCNA_00336 0.16 +0.6
346,327 + CCNA_00336 0.18 +0.5
346,364 - CCNA_00336 0.21 +0.6
346,393 - CCNA_00336 0.23 -0.5
346,401 + CCNA_00336 0.23 -0.1
346,427 + CCNA_00336 0.25 -0.6
346,435 - CCNA_00336 0.25 +0.3
346,453 - CCNA_00336 0.27 +0.4
346,453 - CCNA_00336 0.27 -0.3
346,460 - CCNA_00336 0.27 +0.5
346,462 + CCNA_00336 0.27 -0.5
346,470 - CCNA_00336 0.28 +0.5
346,524 + CCNA_00336 0.32 -1.4
346,524 + CCNA_00336 0.32 +0.4
346,524 + CCNA_00336 0.32 -2.1
346,524 + CCNA_00336 0.32 -0.7
346,524 + CCNA_00336 0.32 -1.0
346,544 - CCNA_00336 0.33 -0.0

Or see this region's nucleotide sequence