Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23610 and BPHYT_RS23615 overlap by 4 nucleotides BPHYT_RS23615 and BPHYT_RS23620 are separated by 67 nucleotides BPHYT_RS23620 and BPHYT_RS23625 are separated by 351 nucleotides
BPHYT_RS23610: BPHYT_RS23610 - alpha/beta hydrolase, at 869,096 to 870,091
_RS23610
BPHYT_RS23615: BPHYT_RS23615 - XRE family transcriptional regulator, at 870,088 to 870,771
_RS23615
BPHYT_RS23620: BPHYT_RS23620 - hypothetical protein, at 870,839 to 871,030
_RS23620
BPHYT_RS23625: BPHYT_RS23625 - membrane protein, at 871,382 to 871,936
_RS23625
Position (kb) 870
871 Strain fitness (log2 ratio) -1
0
1 at 869.097 kb on + strand at 869.172 kb on + strand at 869.172 kb on + strand at 869.173 kb on - strand at 869.303 kb on + strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610 at 869.890 kb on - strand, within BPHYT_RS23610 at 869.911 kb on + strand, within BPHYT_RS23610 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.638 kb on + strand, within BPHYT_RS23615 at 870.699 kb on - strand, within BPHYT_RS23615 at 871.316 kb on - strand at 871.316 kb on - strand at 871.500 kb on + strand, within BPHYT_RS23625 at 871.566 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 869,097 + -0.3 869,172 + -0.4 869,172 + -1.4 869,173 - +0.6 869,303 + BPHYT_RS23610 0.21 +0.7 869,423 - BPHYT_RS23610 0.33 -0.4 869,423 - BPHYT_RS23610 0.33 -1.0 869,890 - BPHYT_RS23610 0.80 +1.7 869,911 + BPHYT_RS23610 0.82 -0.8 870,508 + BPHYT_RS23615 0.61 -1.6 870,508 + BPHYT_RS23615 0.61 -1.5 870,638 + BPHYT_RS23615 0.80 -0.9 870,699 - BPHYT_RS23615 0.89 -1.3 871,316 - +0.1 871,316 - -0.8 871,500 + BPHYT_RS23625 0.21 +0.6 871,566 + BPHYT_RS23625 0.33 -1.3 871,626 + BPHYT_RS23625 0.44 +0.3 871,626 + BPHYT_RS23625 0.44 -0.0
Or see this region's nucleotide sequence