Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03575 and BPHYT_RS03580 are separated by 8 nucleotides BPHYT_RS03580 and BPHYT_RS03585 are separated by 523 nucleotides BPHYT_RS03585 and BPHYT_RS03590 are separated by 483 nucleotides
BPHYT_RS03575: BPHYT_RS03575 - ferrochelatase, at 811,762 to 812,832
_RS03575
BPHYT_RS03580: BPHYT_RS03580 - RNA-binding protein S4, at 812,841 to 813,248
_RS03580
BPHYT_RS03585: BPHYT_RS03585 - protein GrpE, at 813,772 to 814,356
_RS03585
BPHYT_RS03590: BPHYT_RS03590 - chaperone protein DnaK, at 814,840 to 816,792
_RS03590
Position (kb) 813
814
815 Strain fitness (log2 ratio) -1
0
1
2 at 812.818 kb on - strand at 813.165 kb on + strand, within BPHYT_RS03580 at 813.165 kb on + strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.166 kb on - strand, within BPHYT_RS03580 at 813.384 kb on + strand at 813.409 kb on - strand at 813.439 kb on + strand at 813.439 kb on + strand at 813.440 kb on - strand at 813.442 kb on - strand at 813.442 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.492 kb on - strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.502 kb on + strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.503 kb on - strand at 813.550 kb on - strand at 813.558 kb on + strand at 813.559 kb on - strand at 813.751 kb on + strand at 813.751 kb on + strand at 813.755 kb on + strand at 813.755 kb on + strand at 814.354 kb on + strand at 814.355 kb on - strand at 814.493 kb on - strand at 814.505 kb on - strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.508 kb on + strand at 814.509 kb on - strand at 814.510 kb on + strand at 814.511 kb on - strand at 814.617 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand at 814.741 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 812,818 - -1.3 813,165 + BPHYT_RS03580 0.79 +1.3 813,165 + BPHYT_RS03580 0.79 +0.2 813,166 - BPHYT_RS03580 0.80 +0.2 813,166 - BPHYT_RS03580 0.80 +1.1 813,384 + -0.4 813,409 - -0.5 813,439 + +0.4 813,439 + -1.1 813,440 - +1.7 813,442 - +1.5 813,442 - +0.9 813,492 - -0.2 813,492 - -0.4 813,492 - +0.1 813,492 - -0.8 813,492 - +0.2 813,492 - +1.2 813,492 - +0.4 813,502 + -0.4 813,502 + -1.4 813,502 + -0.6 813,503 - +0.5 813,503 - +0.8 813,503 - -0.3 813,550 - +0.7 813,558 + +0.5 813,559 - -0.9 813,751 + -1.5 813,751 + -0.6 813,755 + -0.9 813,755 + -0.6 814,354 + +2.7 814,355 - +0.5 814,493 - -0.8 814,505 - +0.4 814,508 + +0.9 814,508 + -0.2 814,508 + +0.5 814,508 + -1.0 814,509 - +0.6 814,510 + -0.5 814,511 - +0.1 814,617 + +0.6 814,741 + -0.5 814,741 + -0.1 814,741 + -0.7 814,741 + -0.0 814,741 + +1.6
Or see this region's nucleotide sequence