Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02160 and BPHYT_RS02165 overlap by 1 nucleotides BPHYT_RS02165 and BPHYT_RS02170 are separated by 589 nucleotides
BPHYT_RS02160: BPHYT_RS02160 - 8-amino-7-oxononanoate synthase, at 494,134 to 495,318
_RS02160
BPHYT_RS02165: BPHYT_RS02165 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase, at 495,318 to 496,679
_RS02165
BPHYT_RS02170: BPHYT_RS02170 - type VI secretion protein, at 497,269 to 499,155
_RS02170
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 494.516 kb on + strand, within BPHYT_RS02160 at 494.859 kb on - strand, within BPHYT_RS02160 at 494.859 kb on - strand, within BPHYT_RS02160 at 494.982 kb on - strand, within BPHYT_RS02160 at 495.174 kb on - strand, within BPHYT_RS02160 at 495.400 kb on + strand at 495.401 kb on - strand at 495.697 kb on + strand, within BPHYT_RS02165 at 495.949 kb on + strand, within BPHYT_RS02165 at 495.949 kb on + strand, within BPHYT_RS02165 at 495.949 kb on + strand, within BPHYT_RS02165 at 495.950 kb on - strand, within BPHYT_RS02165 at 496.154 kb on - strand, within BPHYT_RS02165 at 496.214 kb on - strand, within BPHYT_RS02165 at 496.728 kb on + strand at 496.814 kb on + strand at 496.945 kb on - strand at 497.025 kb on - strand at 497.293 kb on + strand at 497.294 kb on - strand at 497.311 kb on + strand at 497.311 kb on + strand at 497.312 kb on - strand at 497.401 kb on + strand at 497.401 kb on + strand at 497.402 kb on - strand at 497.506 kb on + strand, within BPHYT_RS02170 at 497.515 kb on + strand, within BPHYT_RS02170 at 497.537 kb on + strand, within BPHYT_RS02170 at 497.571 kb on + strand, within BPHYT_RS02170 at 497.571 kb on + strand, within BPHYT_RS02170 at 497.571 kb on + strand, within BPHYT_RS02170 at 497.571 kb on + strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170 at 497.572 kb on - strand, within BPHYT_RS02170
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 494,516 + BPHYT_RS02160 0.32 +2.0 494,859 - BPHYT_RS02160 0.61 +0.4 494,859 - BPHYT_RS02160 0.61 +0.3 494,982 - BPHYT_RS02160 0.72 -0.3 495,174 - BPHYT_RS02160 0.88 +1.2 495,400 + +0.3 495,401 - +0.7 495,697 + BPHYT_RS02165 0.28 -0.5 495,949 + BPHYT_RS02165 0.46 -1.8 495,949 + BPHYT_RS02165 0.46 -1.5 495,949 + BPHYT_RS02165 0.46 -1.5 495,950 - BPHYT_RS02165 0.46 +0.0 496,154 - BPHYT_RS02165 0.61 -0.4 496,214 - BPHYT_RS02165 0.66 -0.2 496,728 + -0.3 496,814 + -0.7 496,945 - +0.7 497,025 - -0.1 497,293 + -1.1 497,294 - +1.1 497,311 + +0.0 497,311 + +0.3 497,312 - -0.4 497,401 + +0.7 497,401 + -0.4 497,402 - -0.2 497,506 + BPHYT_RS02170 0.13 +1.6 497,515 + BPHYT_RS02170 0.13 +0.6 497,537 + BPHYT_RS02170 0.14 +0.1 497,571 + BPHYT_RS02170 0.16 -1.2 497,571 + BPHYT_RS02170 0.16 -0.4 497,571 + BPHYT_RS02170 0.16 -1.0 497,571 + BPHYT_RS02170 0.16 -1.1 497,572 - BPHYT_RS02170 0.16 -0.6 497,572 - BPHYT_RS02170 0.16 -2.5 497,572 - BPHYT_RS02170 0.16 -0.2 497,572 - BPHYT_RS02170 0.16 -3.0 497,572 - BPHYT_RS02170 0.16 +0.4 497,572 - BPHYT_RS02170 0.16 +1.3
Or see this region's nucleotide sequence