Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02150

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS02145 and BPHYT_RS02150 are separated by 93 nucleotidesBPHYT_RS02150 and BPHYT_RS02155 are separated by 33 nucleotidesBPHYT_RS02155 and BPHYT_RS02160 overlap by 4 nucleotides BPHYT_RS02145: BPHYT_RS02145 - sulfate ABC transporter substrate-binding protein, at 491,156 to 492,181 _RS02145 BPHYT_RS02150: BPHYT_RS02150 - biotin synthase, at 492,275 to 493,360 _RS02150 BPHYT_RS02155: BPHYT_RS02155 - dithiobiotin synthetase, at 493,394 to 494,137 _RS02155 BPHYT_RS02160: BPHYT_RS02160 - 8-amino-7-oxononanoate synthase, at 494,134 to 495,318 _RS02160 Position (kb) 492 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.291 kb on + strand, within BPHYT_RS02145at 491.292 kb on - strand, within BPHYT_RS02145at 491.324 kb on + strand, within BPHYT_RS02145at 491.421 kb on + strand, within BPHYT_RS02145at 491.421 kb on + strand, within BPHYT_RS02145at 491.649 kb on - strand, within BPHYT_RS02145at 491.654 kb on + strand, within BPHYT_RS02145at 491.967 kb on - strand, within BPHYT_RS02145at 492.179 kb on + strandat 492.254 kb on + strandat 492.264 kb on + strandat 492.265 kb on - strandat 492.265 kb on - strandat 492.271 kb on - strandat 492.271 kb on - strandat 492.271 kb on - strandat 492.304 kb on + strandat 492.778 kb on - strand, within BPHYT_RS02150at 492.837 kb on + strand, within BPHYT_RS02150at 492.926 kb on + strand, within BPHYT_RS02150at 493.374 kb on - strandat 493.383 kb on + strandat 493.384 kb on - strandat 493.384 kb on - strandat 493.395 kb on + strandat 493.521 kb on + strand, within BPHYT_RS02155at 493.522 kb on - strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.825 kb on + strand, within BPHYT_RS02155at 493.897 kb on - strand, within BPHYT_RS02155at 493.964 kb on - strand, within BPHYT_RS02155at 493.970 kb on + strand, within BPHYT_RS02155at 494.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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491,291 + BPHYT_RS02145 0.13 +0.1
491,292 - BPHYT_RS02145 0.13 +0.7
491,324 + BPHYT_RS02145 0.16 +1.0
491,421 + BPHYT_RS02145 0.26 -1.7
491,421 + BPHYT_RS02145 0.26 -0.2
491,649 - BPHYT_RS02145 0.48 -0.5
491,654 + BPHYT_RS02145 0.49 -0.6
491,967 - BPHYT_RS02145 0.79 -0.4
492,179 + +2.2
492,254 + +0.3
492,264 + -1.4
492,265 - +0.7
492,265 - +1.0
492,271 - -1.2
492,271 - +0.1
492,271 - +0.8
492,304 + +0.0
492,778 - BPHYT_RS02150 0.46 -2.0
492,837 + BPHYT_RS02150 0.52 -3.0
492,926 + BPHYT_RS02150 0.60 -1.8
493,374 - +0.9
493,383 + -1.1
493,384 - -0.0
493,384 - +1.3
493,395 + -0.1
493,521 + BPHYT_RS02155 0.17 -0.4
493,522 - BPHYT_RS02155 0.17 -0.2
493,825 + BPHYT_RS02155 0.58 -1.1
493,825 + BPHYT_RS02155 0.58 -0.2
493,825 + BPHYT_RS02155 0.58 +1.8
493,897 - BPHYT_RS02155 0.68 -1.0
493,964 - BPHYT_RS02155 0.77 -1.4
493,970 + BPHYT_RS02155 0.77 -1.1
494,106 - +0.2

Or see this region's nucleotide sequence