Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4753 and Ac3H11_4754 are separated by 51 nucleotides Ac3H11_4754 and Ac3H11_4829 are separated by 49 nucleotides Ac3H11_4829 and Ac3H11_4755 are separated by 47 nucleotides Ac3H11_4755 and Ac3H11_4756 are separated by 32 nucleotides
Ac3H11_4753 - Stringent starvation protein A, at 54,160 to 54,771
_4753
Ac3H11_4754 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 54,823 to 55,350
_4754
Ac3H11_4829 - tRNA-Thr-TGT, at 55,400 to 55,472
_4829
Ac3H11_4755 - Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives, at 55,520 to 55,819
_4755
Ac3H11_4756 - Peptidase, M23/M37 family, at 55,852 to 56,814
_4756
Position (kb) 55
56 Strain fitness (log2 ratio) -1
0
1
2 at 54.769 kb on + strand at 54.769 kb on + strand at 54.769 kb on + strand at 54.769 kb on + strand at 54.769 kb on + strand at 54.770 kb on - strand at 54.770 kb on - strand at 54.770 kb on - strand at 54.770 kb on - strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.785 kb on + strand at 54.786 kb on - strand at 54.786 kb on - strand at 54.786 kb on - strand at 54.797 kb on + strand at 54.797 kb on + strand at 55.348 kb on + strand at 55.378 kb on + strand at 55.378 kb on + strand at 55.385 kb on + strand at 55.850 kb on + strand at 55.850 kb on + strand at 55.851 kb on - strand at 55.851 kb on - strand at 55.911 kb on + strand at 55.912 kb on - strand at 55.975 kb on + strand, within Ac3H11_4756 at 55.975 kb on + strand, within Ac3H11_4756 at 55.975 kb on + strand, within Ac3H11_4756 at 55.975 kb on + strand, within Ac3H11_4756 at 55.975 kb on + strand, within Ac3H11_4756 at 55.976 kb on - strand, within Ac3H11_4756 at 55.976 kb on - strand, within Ac3H11_4756 at 55.976 kb on - strand, within Ac3H11_4756 at 55.976 kb on - strand, within Ac3H11_4756 at 55.976 kb on - strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.193 kb on + strand, within Ac3H11_4756 at 56.194 kb on - strand, within Ac3H11_4756 at 56.194 kb on - strand, within Ac3H11_4756 at 56.194 kb on - strand, within Ac3H11_4756 at 56.194 kb on - strand, within Ac3H11_4756
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 54,769 + +0.3 54,769 + -0.3 54,769 + +0.9 54,769 + +0.6 54,769 + +0.4 54,770 - -0.2 54,770 - -1.0 54,770 - -0.4 54,770 - -0.2 54,785 + -1.5 54,785 + +0.4 54,785 + +0.5 54,785 + -0.6 54,785 + +1.9 54,785 + -0.7 54,785 + -0.5 54,786 - -1.7 54,786 - -0.9 54,786 - +1.3 54,797 + -0.2 54,797 + +0.0 55,348 + +0.1 55,378 + -0.4 55,378 + +1.2 55,385 + -0.8 55,850 + +1.1 55,850 + -0.3 55,851 - +0.5 55,851 - +1.3 55,911 + +0.0 55,912 - +1.3 55,975 + Ac3H11_4756 0.13 -0.0 55,975 + Ac3H11_4756 0.13 +0.1 55,975 + Ac3H11_4756 0.13 -0.1 55,975 + Ac3H11_4756 0.13 +0.5 55,975 + Ac3H11_4756 0.13 -1.0 55,976 - Ac3H11_4756 0.13 +0.0 55,976 - Ac3H11_4756 0.13 +0.8 55,976 - Ac3H11_4756 0.13 +0.0 55,976 - Ac3H11_4756 0.13 -0.3 55,976 - Ac3H11_4756 0.13 +0.1 56,193 + Ac3H11_4756 0.35 +0.9 56,193 + Ac3H11_4756 0.35 +0.3 56,193 + Ac3H11_4756 0.35 +1.9 56,193 + Ac3H11_4756 0.35 +1.2 56,193 + Ac3H11_4756 0.35 +0.8 56,193 + Ac3H11_4756 0.35 -0.1 56,193 + Ac3H11_4756 0.35 -1.3 56,193 + Ac3H11_4756 0.35 +0.7 56,194 - Ac3H11_4756 0.36 -0.2 56,194 - Ac3H11_4756 0.36 -1.3 56,194 - Ac3H11_4756 0.36 -0.2 56,194 - Ac3H11_4756 0.36 +0.7
Or see this region's nucleotide sequence