Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_481 and Ac3H11_482 are separated by 53 nucleotides Ac3H11_482 and Ac3H11_483 are separated by 55 nucleotides Ac3H11_483 and Ac3H11_484 are separated by 48 nucleotides
Ac3H11_481 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 176,558 to 177,991
_481
Ac3H11_482 - RND multidrug efflux transporter; Acriflavin resistance protein, at 178,045 to 181,206
_482
Ac3H11_483 - Thioredoxin, at 181,262 to 181,594
_483
Ac3H11_484 - Molybdopterin biosynthesis protein MoeA, at 181,643 to 183,010
_484
Position (kb) 178
179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 177.185 kb on + strand, within Ac3H11_481 at 177.185 kb on + strand, within Ac3H11_481 at 177.236 kb on + strand, within Ac3H11_481 at 177.236 kb on + strand, within Ac3H11_481 at 177.236 kb on + strand, within Ac3H11_481 at 177.236 kb on + strand, within Ac3H11_481 at 177.237 kb on - strand, within Ac3H11_481 at 177.237 kb on - strand, within Ac3H11_481 at 177.237 kb on - strand, within Ac3H11_481 at 177.237 kb on - strand, within Ac3H11_481 at 177.237 kb on - strand, within Ac3H11_481 at 177.329 kb on + strand, within Ac3H11_481 at 177.524 kb on + strand, within Ac3H11_481 at 177.524 kb on + strand, within Ac3H11_481 at 177.524 kb on + strand, within Ac3H11_481 at 177.524 kb on + strand, within Ac3H11_481 at 177.524 kb on + strand, within Ac3H11_481 at 177.525 kb on - strand, within Ac3H11_481 at 177.525 kb on - strand, within Ac3H11_481 at 177.525 kb on - strand, within Ac3H11_481 at 178.196 kb on - strand at 178.574 kb on - strand, within Ac3H11_482 at 178.574 kb on - strand, within Ac3H11_482 at 178.588 kb on + strand, within Ac3H11_482 at 178.588 kb on + strand, within Ac3H11_482 at 178.589 kb on - strand, within Ac3H11_482 at 178.589 kb on - strand, within Ac3H11_482 at 178.589 kb on - strand, within Ac3H11_482 at 178.589 kb on - strand, within Ac3H11_482 at 178.589 kb on - strand, within Ac3H11_482 at 179.044 kb on + strand, within Ac3H11_482 at 179.044 kb on + strand, within Ac3H11_482 at 179.044 kb on + strand, within Ac3H11_482 at 179.044 kb on + strand, within Ac3H11_482 at 179.045 kb on - strand, within Ac3H11_482 at 179.045 kb on - strand, within Ac3H11_482 at 179.045 kb on - strand, within Ac3H11_482 at 179.045 kb on - strand, within Ac3H11_482 at 179.272 kb on + strand, within Ac3H11_482 at 179.272 kb on + strand, within Ac3H11_482 at 179.272 kb on + strand, within Ac3H11_482 at 179.272 kb on + strand, within Ac3H11_482 at 179.273 kb on - strand, within Ac3H11_482 at 179.273 kb on - strand, within Ac3H11_482 at 179.273 kb on - strand, within Ac3H11_482 at 179.273 kb on - strand, within Ac3H11_482 at 179.273 kb on - strand, within Ac3H11_482 at 179.377 kb on + strand, within Ac3H11_482 at 179.377 kb on + strand, within Ac3H11_482 at 179.377 kb on + strand, within Ac3H11_482 at 179.378 kb on - strand, within Ac3H11_482 at 179.378 kb on - strand, within Ac3H11_482 at 179.378 kb on - strand, within Ac3H11_482 at 179.581 kb on + strand, within Ac3H11_482 at 179.581 kb on + strand, within Ac3H11_482 at 179.581 kb on + strand, within Ac3H11_482 at 179.582 kb on - strand, within Ac3H11_482 at 179.582 kb on - strand, within Ac3H11_482 at 179.582 kb on - strand, within Ac3H11_482 at 179.582 kb on - strand, within Ac3H11_482 at 179.867 kb on - strand, within Ac3H11_482 at 179.932 kb on + strand, within Ac3H11_482 at 179.933 kb on - strand, within Ac3H11_482 at 179.933 kb on - strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.082 kb on + strand, within Ac3H11_482 at 180.083 kb on - strand, within Ac3H11_482 at 180.083 kb on - strand, within Ac3H11_482 at 180.083 kb on - strand, within Ac3H11_482 at 180.106 kb on + strand, within Ac3H11_482 at 180.107 kb on - strand, within Ac3H11_482 at 180.107 kb on - strand, within Ac3H11_482 at 180.314 kb on - strand, within Ac3H11_482 at 180.334 kb on + strand, within Ac3H11_482 at 180.334 kb on + strand, within Ac3H11_482 at 180.334 kb on + strand, within Ac3H11_482 at 180.334 kb on + strand, within Ac3H11_482 at 180.335 kb on - strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.397 kb on + strand, within Ac3H11_482 at 180.398 kb on - strand, within Ac3H11_482 at 180.398 kb on - strand, within Ac3H11_482 at 180.398 kb on - strand, within Ac3H11_482 at 180.398 kb on - strand, within Ac3H11_482 at 180.398 kb on - strand, within Ac3H11_482 at 180.532 kb on + strand, within Ac3H11_482 at 180.533 kb on - strand, within Ac3H11_482 at 180.533 kb on - strand, within Ac3H11_482 at 180.595 kb on + strand, within Ac3H11_482 at 180.595 kb on + strand, within Ac3H11_482 at 180.808 kb on + strand, within Ac3H11_482 at 180.951 kb on + strand at 180.951 kb on + strand at 180.951 kb on + strand at 180.952 kb on - strand at 180.952 kb on - strand at 180.952 kb on - strand at 181.059 kb on + strand at 181.059 kb on + strand at 181.060 kb on - strand at 181.060 kb on - strand at 181.060 kb on - strand at 181.060 kb on - strand at 181.060 kb on - strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.105 kb on + strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.106 kb on - strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.192 kb on + strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.193 kb on - strand at 181.204 kb on + strand at 181.204 kb on + strand at 181.205 kb on - strand at 181.205 kb on - strand at 181.223 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.249 kb on + strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.250 kb on - strand at 181.252 kb on + strand at 181.253 kb on - strand at 181.253 kb on - strand at 181.322 kb on + strand, within Ac3H11_483 at 181.587 kb on + strand at 181.594 kb on + strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.827 kb on + strand, within Ac3H11_484 at 181.827 kb on + strand, within Ac3H11_484 at 181.827 kb on + strand, within Ac3H11_484 at 181.828 kb on - strand, within Ac3H11_484 at 181.931 kb on + strand, within Ac3H11_484 at 181.931 kb on + strand, within Ac3H11_484 at 181.931 kb on + strand, within Ac3H11_484 at 181.931 kb on + strand, within Ac3H11_484 at 181.932 kb on - strand, within Ac3H11_484 at 181.932 kb on - strand, within Ac3H11_484 at 182.026 kb on + strand, within Ac3H11_484 at 182.029 kb on - strand, within Ac3H11_484
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 177,185 + Ac3H11_481 0.44 +0.4 177,185 + Ac3H11_481 0.44 +0.2 177,236 + Ac3H11_481 0.47 +0.0 177,236 + Ac3H11_481 0.47 -0.3 177,236 + Ac3H11_481 0.47 -0.1 177,236 + Ac3H11_481 0.47 +0.8 177,237 - Ac3H11_481 0.47 -0.2 177,237 - Ac3H11_481 0.47 -0.2 177,237 - Ac3H11_481 0.47 -0.2 177,237 - Ac3H11_481 0.47 +0.2 177,237 - Ac3H11_481 0.47 -1.1 177,329 + Ac3H11_481 0.54 -0.0 177,524 + Ac3H11_481 0.67 +0.5 177,524 + Ac3H11_481 0.67 -2.2 177,524 + Ac3H11_481 0.67 +0.0 177,524 + Ac3H11_481 0.67 -0.0 177,524 + Ac3H11_481 0.67 +0.9 177,525 - Ac3H11_481 0.67 -0.6 177,525 - Ac3H11_481 0.67 -0.7 177,525 - Ac3H11_481 0.67 +0.2 178,196 - +0.4 178,574 - Ac3H11_482 0.17 -1.0 178,574 - Ac3H11_482 0.17 +0.5 178,588 + Ac3H11_482 0.17 -0.5 178,588 + Ac3H11_482 0.17 +0.0 178,589 - Ac3H11_482 0.17 +0.7 178,589 - Ac3H11_482 0.17 +0.5 178,589 - Ac3H11_482 0.17 -0.2 178,589 - Ac3H11_482 0.17 -0.9 178,589 - Ac3H11_482 0.17 +1.1 179,044 + Ac3H11_482 0.32 -0.2 179,044 + Ac3H11_482 0.32 -2.5 179,044 + Ac3H11_482 0.32 -0.4 179,044 + Ac3H11_482 0.32 -0.3 179,045 - Ac3H11_482 0.32 -0.6 179,045 - Ac3H11_482 0.32 +0.9 179,045 - Ac3H11_482 0.32 -1.4 179,045 - Ac3H11_482 0.32 +0.0 179,272 + Ac3H11_482 0.39 -0.4 179,272 + Ac3H11_482 0.39 -1.0 179,272 + Ac3H11_482 0.39 +0.3 179,272 + Ac3H11_482 0.39 -0.2 179,273 - Ac3H11_482 0.39 -1.1 179,273 - Ac3H11_482 0.39 -0.2 179,273 - Ac3H11_482 0.39 +0.3 179,273 - Ac3H11_482 0.39 -0.5 179,273 - Ac3H11_482 0.39 -0.3 179,377 + Ac3H11_482 0.42 -0.3 179,377 + Ac3H11_482 0.42 -0.2 179,377 + Ac3H11_482 0.42 -0.1 179,378 - Ac3H11_482 0.42 -1.1 179,378 - Ac3H11_482 0.42 -0.1 179,378 - Ac3H11_482 0.42 +1.5 179,581 + Ac3H11_482 0.49 +0.2 179,581 + Ac3H11_482 0.49 +0.3 179,581 + Ac3H11_482 0.49 -1.7 179,582 - Ac3H11_482 0.49 -0.1 179,582 - Ac3H11_482 0.49 +0.9 179,582 - Ac3H11_482 0.49 -0.1 179,582 - Ac3H11_482 0.49 +0.5 179,867 - Ac3H11_482 0.58 -0.1 179,932 + Ac3H11_482 0.60 -0.0 179,933 - Ac3H11_482 0.60 -0.8 179,933 - Ac3H11_482 0.60 +0.6 180,082 + Ac3H11_482 0.64 -0.8 180,082 + Ac3H11_482 0.64 +0.3 180,082 + Ac3H11_482 0.64 -0.8 180,082 + Ac3H11_482 0.64 -0.6 180,082 + Ac3H11_482 0.64 -0.6 180,082 + Ac3H11_482 0.64 -0.2 180,083 - Ac3H11_482 0.64 +0.4 180,083 - Ac3H11_482 0.64 -0.5 180,083 - Ac3H11_482 0.64 -0.4 180,106 + Ac3H11_482 0.65 -0.2 180,107 - Ac3H11_482 0.65 +0.5 180,107 - Ac3H11_482 0.65 +0.7 180,314 - Ac3H11_482 0.72 +0.7 180,334 + Ac3H11_482 0.72 -0.5 180,334 + Ac3H11_482 0.72 -0.4 180,334 + Ac3H11_482 0.72 -0.7 180,334 + Ac3H11_482 0.72 +0.3 180,335 - Ac3H11_482 0.72 -0.4 180,397 + Ac3H11_482 0.74 -0.4 180,397 + Ac3H11_482 0.74 -1.3 180,397 + Ac3H11_482 0.74 -0.4 180,397 + Ac3H11_482 0.74 -0.2 180,397 + Ac3H11_482 0.74 +0.2 180,397 + Ac3H11_482 0.74 -0.1 180,397 + Ac3H11_482 0.74 +0.7 180,397 + Ac3H11_482 0.74 -0.4 180,397 + Ac3H11_482 0.74 -0.2 180,398 - Ac3H11_482 0.74 +0.2 180,398 - Ac3H11_482 0.74 -0.8 180,398 - Ac3H11_482 0.74 -0.8 180,398 - Ac3H11_482 0.74 -1.1 180,398 - Ac3H11_482 0.74 -0.8 180,532 + Ac3H11_482 0.79 -0.4 180,533 - Ac3H11_482 0.79 +1.8 180,533 - Ac3H11_482 0.79 +0.9 180,595 + Ac3H11_482 0.81 -1.2 180,595 + Ac3H11_482 0.81 +0.1 180,808 + Ac3H11_482 0.87 -0.7 180,951 + -0.8 180,951 + +0.3 180,951 + -0.3 180,952 - +0.6 180,952 - +0.2 180,952 - +0.8 181,059 + -0.7 181,059 + -0.2 181,060 - -0.4 181,060 - -0.0 181,060 - -0.5 181,060 - -1.1 181,060 - +0.7 181,105 + -0.2 181,105 + -0.0 181,105 + -0.5 181,105 + +1.3 181,105 + -0.1 181,105 + -0.6 181,105 + +0.6 181,106 - -0.6 181,106 - +0.8 181,106 - -1.8 181,106 - +0.2 181,106 - -0.7 181,106 - -1.4 181,106 - -0.7 181,106 - -0.4 181,106 - -0.3 181,106 - -0.8 181,106 - +0.3 181,106 - -1.0 181,106 - -0.7 181,106 - -0.3 181,106 - +0.3 181,106 - +0.9 181,192 + -0.5 181,192 + -0.4 181,192 + +0.7 181,192 + -0.2 181,192 + -1.3 181,192 + -0.3 181,193 - +0.4 181,193 - -0.3 181,193 - -0.8 181,193 - -0.2 181,193 - +0.2 181,204 + -0.1 181,204 + -0.3 181,205 - +0.2 181,205 - +0.6 181,223 + -0.1 181,249 + +0.1 181,249 + +0.6 181,249 + +0.1 181,249 + +0.0 181,249 + -0.4 181,249 + -1.3 181,249 + +0.5 181,249 + +0.1 181,249 + -0.1 181,250 - -0.1 181,250 - -0.7 181,250 - -0.1 181,250 - -0.7 181,250 - +0.9 181,250 - +0.2 181,250 - -0.7 181,250 - -0.2 181,250 - -0.8 181,250 - +0.8 181,250 - -1.0 181,250 - +0.3 181,250 - -0.8 181,252 + +0.3 181,253 - -0.8 181,253 - -0.8 181,322 + Ac3H11_483 0.18 +0.9 181,587 + -0.6 181,594 + +0.6 181,595 - -0.3 181,595 - -0.1 181,595 - +0.6 181,595 - +0.4 181,827 + Ac3H11_484 0.13 -0.2 181,827 + Ac3H11_484 0.13 -0.7 181,827 + Ac3H11_484 0.13 -0.1 181,828 - Ac3H11_484 0.14 +0.8 181,931 + Ac3H11_484 0.21 +0.7 181,931 + Ac3H11_484 0.21 +0.8 181,931 + Ac3H11_484 0.21 +0.4 181,931 + Ac3H11_484 0.21 +0.2 181,932 - Ac3H11_484 0.21 +0.1 181,932 - Ac3H11_484 0.21 +0.7 182,026 + Ac3H11_484 0.28 -0.2 182,029 - Ac3H11_484 0.28 -0.2
Or see this region's nucleotide sequence