Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4463 and Ac3H11_4464 are separated by 45 nucleotides Ac3H11_4464 and Ac3H11_4693 are separated by 52 nucleotides Ac3H11_4693 and Ac3H11_4465 are separated by 197 nucleotides
Ac3H11_4463 - Nitrogen regulation protein NtrY (EC 2.7.3.-), at 45,341 to 47,632
_4463
Ac3H11_4464 - Probable two component response regulator transcription regulator protein, at 47,678 to 48,361
_4464
Ac3H11_4693 - tRNA-Phe-GAA, at 48,414 to 48,486
_4693
Ac3H11_4465 - Putative heat shock protein YegD, at 48,684 to 49,937
_4465
Position (kb) 48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 47.616 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 47.633 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.359 kb on + strand at 48.648 kb on - strand at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.873 kb on + strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.874 kb on - strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.975 kb on + strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 48.976 kb on - strand, within Ac3H11_4465 at 49.197 kb on + strand, within Ac3H11_4465 at 49.198 kb on - strand, within Ac3H11_4465 at 49.228 kb on + strand, within Ac3H11_4465 at 49.228 kb on + strand, within Ac3H11_4465 at 49.229 kb on - strand, within Ac3H11_4465 at 49.229 kb on - strand, within Ac3H11_4465 at 49.396 kb on + strand, within Ac3H11_4465 at 49.397 kb on - strand, within Ac3H11_4465
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 47,616 + -0.6 47,633 + -2.2 47,633 + -3.0 47,633 + -4.5 48,359 + -0.6 48,359 + -0.0 48,359 + -0.1 48,648 - -0.4 48,873 + Ac3H11_4465 0.15 +0.0 48,873 + Ac3H11_4465 0.15 -0.7 48,873 + Ac3H11_4465 0.15 +0.2 48,873 + Ac3H11_4465 0.15 -1.0 48,873 + Ac3H11_4465 0.15 -1.1 48,874 - Ac3H11_4465 0.15 -1.9 48,874 - Ac3H11_4465 0.15 -0.6 48,874 - Ac3H11_4465 0.15 -2.5 48,874 - Ac3H11_4465 0.15 -2.0 48,975 + Ac3H11_4465 0.23 -1.7 48,975 + Ac3H11_4465 0.23 -1.1 48,975 + Ac3H11_4465 0.23 +0.4 48,975 + Ac3H11_4465 0.23 -0.4 48,976 - Ac3H11_4465 0.23 -1.0 48,976 - Ac3H11_4465 0.23 -1.9 48,976 - Ac3H11_4465 0.23 -0.1 48,976 - Ac3H11_4465 0.23 -1.3 48,976 - Ac3H11_4465 0.23 -1.6 49,197 + Ac3H11_4465 0.41 +0.5 49,198 - Ac3H11_4465 0.41 -1.4 49,228 + Ac3H11_4465 0.43 +0.7 49,228 + Ac3H11_4465 0.43 +0.2 49,229 - Ac3H11_4465 0.43 -2.9 49,229 - Ac3H11_4465 0.43 -0.8 49,396 + Ac3H11_4465 0.57 -1.0 49,397 - Ac3H11_4465 0.57 -0.6
Or see this region's nucleotide sequence