Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3722 and Ac3H11_3723 are separated by 243 nucleotides Ac3H11_3723 and Ac3H11_3724 are separated by 102 nucleotides
Ac3H11_3722 - Urease accessory protein UreD, at 81,839 to 82,675
_3722
Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307
_3723
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.335 kb on + strand, within Ac3H11_3722 at 82.428 kb on + strand, within Ac3H11_3722 at 82.570 kb on - strand, within Ac3H11_3722 at 82.630 kb on + strand at 82.630 kb on + strand at 82.630 kb on + strand at 82.630 kb on + strand at 82.631 kb on - strand at 82.631 kb on - strand at 82.631 kb on - strand at 82.645 kb on - strand at 82.695 kb on + strand at 82.971 kb on + strand at 82.972 kb on - strand at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.119 kb on - strand, within Ac3H11_3723 at 83.119 kb on - strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.359 kb on - strand, within Ac3H11_3723 at 83.359 kb on - strand, within Ac3H11_3723 at 83.410 kb on - strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.530 kb on - strand, within Ac3H11_3723 at 83.709 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.312 kb on + strand at 84.313 kb on - strand at 84.453 kb on - strand at 84.453 kb on - strand at 84.669 kb on + strand, within Ac3H11_3724 at 84.669 kb on + strand, within Ac3H11_3724 at 84.670 kb on - strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 85.092 kb on + strand, within Ac3H11_3724 at 85.178 kb on + strand, within Ac3H11_3724
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 82,335 + Ac3H11_3722 0.59 -2.3 82,428 + Ac3H11_3722 0.70 +0.6 82,570 - Ac3H11_3722 0.87 -0.7 82,630 + -0.3 82,630 + -0.9 82,630 + -0.1 82,630 + -0.8 82,631 - +0.3 82,631 - -2.0 82,631 - +0.7 82,645 - -0.3 82,695 + -0.0 82,971 + +1.7 82,972 - +0.5 83,079 + Ac3H11_3723 0.12 -0.3 83,079 + Ac3H11_3723 0.12 -0.9 83,079 + Ac3H11_3723 0.12 -0.4 83,079 + Ac3H11_3723 0.12 +0.2 83,079 + Ac3H11_3723 0.12 +0.0 83,080 - Ac3H11_3723 0.12 +1.0 83,080 - Ac3H11_3723 0.12 +1.8 83,080 - Ac3H11_3723 0.12 -0.4 83,080 - Ac3H11_3723 0.12 -0.2 83,119 - Ac3H11_3723 0.14 +0.7 83,119 - Ac3H11_3723 0.14 -0.0 83,304 + Ac3H11_3723 0.28 +0.3 83,304 + Ac3H11_3723 0.28 -0.5 83,304 + Ac3H11_3723 0.28 -1.9 83,305 - Ac3H11_3723 0.28 -0.5 83,305 - Ac3H11_3723 0.28 -0.4 83,305 - Ac3H11_3723 0.28 -0.2 83,305 - Ac3H11_3723 0.28 +0.0 83,305 - Ac3H11_3723 0.28 +0.0 83,305 - Ac3H11_3723 0.28 -0.4 83,359 - Ac3H11_3723 0.32 +0.2 83,359 - Ac3H11_3723 0.32 -1.0 83,410 - Ac3H11_3723 0.35 -0.9 83,529 + Ac3H11_3723 0.44 +0.1 83,529 + Ac3H11_3723 0.44 -0.6 83,530 - Ac3H11_3723 0.44 +0.1 83,709 + Ac3H11_3723 0.57 -1.2 84,057 + Ac3H11_3723 0.82 -0.1 84,057 + Ac3H11_3723 0.82 +0.8 84,058 - Ac3H11_3723 0.82 -1.0 84,058 - Ac3H11_3723 0.82 +0.3 84,058 - Ac3H11_3723 0.82 +0.1 84,312 + +1.3 84,313 - +0.7 84,453 - +0.1 84,453 - +0.5 84,669 + Ac3H11_3724 0.28 +0.3 84,669 + Ac3H11_3724 0.28 -0.1 84,670 - Ac3H11_3724 0.28 -0.5 84,738 + Ac3H11_3724 0.36 +0.8 84,738 + Ac3H11_3724 0.36 -0.8 85,092 + Ac3H11_3724 0.74 +0.5 85,178 + Ac3H11_3724 0.83 +0.2
Or see this region's nucleotide sequence