Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3494 and Ac3H11_3495 are separated by 46 nucleotides Ac3H11_3495 and Ac3H11_3496 overlap by 4 nucleotides Ac3H11_3496 and Ac3H11_3497 are separated by 8 nucleotides Ac3H11_3497 and Ac3H11_3498 overlap by 4 nucleotides Ac3H11_3498 and Ac3H11_3499 are separated by 71 nucleotides
Ac3H11_3494 - phage-related putative exported protein, at 40,693 to 41,064
_3494
Ac3H11_3495 - hypothetical protein, at 41,111 to 42,058
_3495
Ac3H11_3496 - Signal recognition particle receptor protein FtsY (=alpha subunit) (TC 3.A.5.1.1), at 42,055 to 42,441
_3496
Ac3H11_3497 - hypothetical protein, at 42,450 to 42,785
_3497
Ac3H11_3498 - hypothetical protein, at 42,782 to 43,237
_3498
Ac3H11_3499 - hypothetical protein, at 43,309 to 44,088
_3499
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1 at 41.348 kb on + strand, within Ac3H11_3495 at 41.445 kb on + strand, within Ac3H11_3495 at 41.799 kb on - strand, within Ac3H11_3495 at 41.799 kb on - strand, within Ac3H11_3495 at 41.824 kb on + strand, within Ac3H11_3495 at 41.825 kb on - strand, within Ac3H11_3495 at 41.825 kb on - strand, within Ac3H11_3495 at 41.852 kb on + strand, within Ac3H11_3495 at 41.853 kb on - strand, within Ac3H11_3495 at 41.853 kb on - strand, within Ac3H11_3495 at 41.906 kb on + strand, within Ac3H11_3495 at 41.907 kb on - strand, within Ac3H11_3495 at 41.942 kb on + strand, within Ac3H11_3495 at 41.943 kb on - strand, within Ac3H11_3495 at 41.969 kb on + strand at 41.972 kb on + strand at 41.972 kb on + strand at 42.110 kb on - strand, within Ac3H11_3496 at 42.487 kb on - strand, within Ac3H11_3497 at 42.922 kb on + strand, within Ac3H11_3498 at 42.923 kb on - strand, within Ac3H11_3498 at 43.001 kb on + strand, within Ac3H11_3498 at 43.001 kb on + strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.002 kb on - strand, within Ac3H11_3498 at 43.064 kb on + strand, within Ac3H11_3498 at 43.085 kb on - strand, within Ac3H11_3498 at 43.143 kb on + strand, within Ac3H11_3498
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 41,348 + Ac3H11_3495 0.25 -0.5 41,445 + Ac3H11_3495 0.35 -0.3 41,799 - Ac3H11_3495 0.73 +0.5 41,799 - Ac3H11_3495 0.73 -0.2 41,824 + Ac3H11_3495 0.75 -0.2 41,825 - Ac3H11_3495 0.75 +0.5 41,825 - Ac3H11_3495 0.75 +0.7 41,852 + Ac3H11_3495 0.78 -0.1 41,853 - Ac3H11_3495 0.78 +0.6 41,853 - Ac3H11_3495 0.78 -0.1 41,906 + Ac3H11_3495 0.84 +0.0 41,907 - Ac3H11_3495 0.84 -0.6 41,942 + Ac3H11_3495 0.88 -0.2 41,943 - Ac3H11_3495 0.88 +0.1 41,969 + +0.3 41,972 + +0.3 41,972 + +0.3 42,110 - Ac3H11_3496 0.14 -1.3 42,487 - Ac3H11_3497 0.11 +1.6 42,922 + Ac3H11_3498 0.31 -1.7 42,923 - Ac3H11_3498 0.31 -0.1 43,001 + Ac3H11_3498 0.48 +1.4 43,001 + Ac3H11_3498 0.48 +0.9 43,002 - Ac3H11_3498 0.48 -0.3 43,002 - Ac3H11_3498 0.48 +0.3 43,002 - Ac3H11_3498 0.48 +0.9 43,064 + Ac3H11_3498 0.62 +1.3 43,085 - Ac3H11_3498 0.66 +0.7 43,143 + Ac3H11_3498 0.79 -1.2
Or see this region's nucleotide sequence