Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2682 and Ac3H11_2683 are separated by 143 nucleotides Ac3H11_2683 and Ac3H11_2684 are separated by 76 nucleotides
Ac3H11_2682 - Polyhydroxyalkanoic acid synthase, at 976,246 to 977,997
_2682
Ac3H11_2683 - Sodium/glutamate symporter, at 978,141 to 978,518
_2683
Ac3H11_2684 - Mobile element protein, at 978,595 to 980,133
_2684
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.196 kb on + strand, within Ac3H11_2682 at 977.196 kb on + strand, within Ac3H11_2682 at 977.196 kb on + strand, within Ac3H11_2682 at 977.196 kb on + strand, within Ac3H11_2682 at 977.216 kb on + strand, within Ac3H11_2682 at 977.217 kb on - strand, within Ac3H11_2682 at 977.221 kb on + strand, within Ac3H11_2682 at 977.221 kb on + strand, within Ac3H11_2682 at 977.232 kb on + strand, within Ac3H11_2682 at 977.233 kb on - strand, within Ac3H11_2682 at 977.251 kb on + strand, within Ac3H11_2682 at 977.251 kb on + strand, within Ac3H11_2682 at 977.251 kb on + strand, within Ac3H11_2682 at 977.251 kb on + strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.252 kb on - strand, within Ac3H11_2682 at 977.255 kb on + strand, within Ac3H11_2682 at 977.255 kb on + strand, within Ac3H11_2682 at 977.255 kb on + strand, within Ac3H11_2682 at 977.255 kb on + strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.256 kb on - strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.258 kb on + strand, within Ac3H11_2682 at 977.259 kb on - strand, within Ac3H11_2682 at 977.259 kb on - strand, within Ac3H11_2682 at 977.324 kb on + strand, within Ac3H11_2682 at 977.325 kb on - strand, within Ac3H11_2682 at 977.325 kb on - strand, within Ac3H11_2682 at 977.380 kb on + strand, within Ac3H11_2682 at 977.431 kb on + strand, within Ac3H11_2682 at 977.477 kb on - strand, within Ac3H11_2682 at 977.783 kb on - strand, within Ac3H11_2682 at 977.854 kb on + strand at 977.855 kb on - strand at 977.905 kb on - strand at 978.003 kb on - strand at 978.003 kb on - strand at 978.005 kb on + strand at 978.005 kb on + strand at 978.005 kb on + strand at 978.012 kb on - strand at 978.012 kb on - strand at 978.025 kb on + strand at 978.025 kb on + strand at 978.025 kb on + strand at 978.025 kb on + strand at 978.026 kb on - strand at 978.026 kb on - strand at 978.026 kb on - strand at 978.026 kb on - strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.104 kb on + strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.105 kb on - strand at 978.162 kb on + strand at 978.163 kb on - strand at 978.163 kb on - strand at 978.163 kb on - strand at 978.198 kb on + strand, within Ac3H11_2683 at 978.199 kb on - strand, within Ac3H11_2683 at 978.199 kb on - strand, within Ac3H11_2683 at 978.199 kb on - strand, within Ac3H11_2683 at 978.281 kb on + strand, within Ac3H11_2683 at 978.282 kb on - strand, within Ac3H11_2683 at 978.282 kb on - strand, within Ac3H11_2683 at 978.297 kb on - strand, within Ac3H11_2683 at 978.331 kb on + strand, within Ac3H11_2683 at 978.332 kb on - strand, within Ac3H11_2683 at 978.580 kb on - strand at 978.582 kb on + strand at 978.582 kb on + strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.583 kb on - strand at 978.589 kb on + strand at 978.589 kb on + strand at 978.590 kb on - strand at 978.598 kb on + strand at 978.599 kb on - strand at 978.599 kb on - strand at 978.599 kb on - strand at 978.604 kb on + strand at 978.605 kb on - strand at 978.634 kb on + strand at 978.635 kb on - strand at 978.635 kb on - strand at 978.635 kb on - strand at 978.752 kb on - strand, within Ac3H11_2684 at 978.808 kb on + strand, within Ac3H11_2684 at 978.808 kb on + strand, within Ac3H11_2684 at 978.809 kb on - strand, within Ac3H11_2684 at 978.809 kb on - strand, within Ac3H11_2684 at 978.809 kb on - strand, within Ac3H11_2684 at 978.946 kb on + strand, within Ac3H11_2684 at 978.947 kb on - strand, within Ac3H11_2684 at 979.048 kb on + strand, within Ac3H11_2684 at 979.048 kb on + strand, within Ac3H11_2684 at 979.049 kb on - strand, within Ac3H11_2684 at 979.049 kb on - strand, within Ac3H11_2684 at 979.157 kb on + strand, within Ac3H11_2684 at 979.223 kb on + strand, within Ac3H11_2684 at 979.303 kb on + strand, within Ac3H11_2684 at 979.303 kb on + strand, within Ac3H11_2684 at 979.303 kb on + strand, within Ac3H11_2684 at 979.303 kb on + strand, within Ac3H11_2684 at 979.344 kb on + strand, within Ac3H11_2684 at 979.344 kb on + strand, within Ac3H11_2684 at 979.345 kb on - strand, within Ac3H11_2684 at 979.345 kb on - strand, within Ac3H11_2684 at 979.352 kb on - strand, within Ac3H11_2684 at 979.357 kb on + strand, within Ac3H11_2684 at 979.358 kb on - strand, within Ac3H11_2684 at 979.358 kb on - strand at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.390 kb on + strand, within Ac3H11_2684 at 979.391 kb on - strand, within Ac3H11_2684 at 979.391 kb on - strand, within Ac3H11_2684 at 979.391 kb on - strand, within Ac3H11_2684 at 979.444 kb on + strand, within Ac3H11_2684 at 979.444 kb on + strand, within Ac3H11_2684 at 979.444 kb on + strand, within Ac3H11_2684 at 979.451 kb on - strand, within Ac3H11_2684 at 979.508 kb on + strand, within Ac3H11_2684 at 979.509 kb on - strand, within Ac3H11_2684
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 977,196 + Ac3H11_2682 0.54 +0.0 977,196 + Ac3H11_2682 0.54 -0.3 977,196 + Ac3H11_2682 0.54 -0.3 977,196 + Ac3H11_2682 0.54 +0.2 977,216 + Ac3H11_2682 0.55 +0.2 977,217 - Ac3H11_2682 0.55 +0.2 977,221 + Ac3H11_2682 0.56 -2.1 977,221 + Ac3H11_2682 0.56 +0.5 977,232 + Ac3H11_2682 0.56 +1.5 977,233 - Ac3H11_2682 0.56 +0.7 977,251 + Ac3H11_2682 0.57 +1.0 977,251 + Ac3H11_2682 0.57 +0.4 977,251 + Ac3H11_2682 0.57 -0.8 977,251 + Ac3H11_2682 0.57 +0.3 977,252 - Ac3H11_2682 0.57 +0.4 977,252 - Ac3H11_2682 0.57 +0.4 977,252 - Ac3H11_2682 0.57 +0.6 977,252 - Ac3H11_2682 0.57 +0.6 977,252 - Ac3H11_2682 0.57 +0.1 977,252 - Ac3H11_2682 0.57 +0.2 977,255 + Ac3H11_2682 0.58 +0.2 977,255 + Ac3H11_2682 0.58 +0.2 977,255 + Ac3H11_2682 0.58 -0.6 977,255 + Ac3H11_2682 0.58 +0.6 977,256 - Ac3H11_2682 0.58 -0.0 977,256 - Ac3H11_2682 0.58 -0.7 977,256 - Ac3H11_2682 0.58 +0.2 977,256 - Ac3H11_2682 0.58 +0.6 977,256 - Ac3H11_2682 0.58 +0.2 977,256 - Ac3H11_2682 0.58 -1.1 977,256 - Ac3H11_2682 0.58 +0.2 977,256 - Ac3H11_2682 0.58 -1.3 977,256 - Ac3H11_2682 0.58 +0.2 977,256 - Ac3H11_2682 0.58 -0.3 977,256 - Ac3H11_2682 0.58 +0.8 977,256 - Ac3H11_2682 0.58 +1.2 977,256 - Ac3H11_2682 0.58 -0.8 977,258 + Ac3H11_2682 0.58 -0.0 977,258 + Ac3H11_2682 0.58 -0.4 977,258 + Ac3H11_2682 0.58 -0.3 977,258 + Ac3H11_2682 0.58 -0.3 977,258 + Ac3H11_2682 0.58 -0.8 977,258 + Ac3H11_2682 0.58 -0.2 977,259 - Ac3H11_2682 0.58 +1.4 977,259 - Ac3H11_2682 0.58 +0.3 977,324 + Ac3H11_2682 0.62 -0.1 977,325 - Ac3H11_2682 0.62 +0.0 977,325 - Ac3H11_2682 0.62 -0.8 977,380 + Ac3H11_2682 0.65 -0.1 977,431 + Ac3H11_2682 0.68 -0.1 977,477 - Ac3H11_2682 0.70 +2.5 977,783 - Ac3H11_2682 0.88 -0.2 977,854 + -1.5 977,855 - -1.0 977,905 - +0.9 978,003 - -0.4 978,003 - +1.5 978,005 + +0.2 978,005 + +0.7 978,005 + +0.0 978,012 - -0.6 978,012 - +0.3 978,025 + +0.3 978,025 + -0.6 978,025 + +0.1 978,025 + +0.0 978,026 - -0.5 978,026 - +0.6 978,026 - +0.2 978,026 - -0.4 978,104 + +0.2 978,104 + +0.0 978,104 + -0.7 978,104 + -0.0 978,104 + -0.2 978,104 + -0.1 978,104 + +0.4 978,104 + +0.5 978,105 - +0.3 978,105 - -0.2 978,105 - -0.2 978,105 - +0.9 978,105 - -0.7 978,105 - +0.3 978,105 - +0.3 978,105 - +0.4 978,105 - +0.9 978,105 - +0.2 978,162 + +0.3 978,163 - -2.3 978,163 - +0.8 978,163 - +0.5 978,198 + Ac3H11_2683 0.15 +0.3 978,199 - Ac3H11_2683 0.15 +1.6 978,199 - Ac3H11_2683 0.15 +1.1 978,199 - Ac3H11_2683 0.15 -0.0 978,281 + Ac3H11_2683 0.37 +0.5 978,282 - Ac3H11_2683 0.37 +0.4 978,282 - Ac3H11_2683 0.37 +0.4 978,297 - Ac3H11_2683 0.41 +0.1 978,331 + Ac3H11_2683 0.50 -0.0 978,332 - Ac3H11_2683 0.51 +1.3 978,580 - +0.1 978,582 + +0.2 978,582 + +0.0 978,583 - -0.1 978,583 - -0.2 978,583 - -0.9 978,583 - +0.1 978,583 - -1.8 978,583 - +0.0 978,583 - +1.1 978,589 + -0.6 978,589 + +0.5 978,590 - +0.8 978,598 + -0.2 978,599 - -0.6 978,599 - +0.3 978,599 - -2.8 978,604 + +0.2 978,605 - -0.0 978,634 + +1.1 978,635 - -0.5 978,635 - +0.6 978,635 - -0.3 978,752 - Ac3H11_2684 0.10 +0.4 978,808 + Ac3H11_2684 0.14 -0.8 978,808 + Ac3H11_2684 0.14 +0.7 978,809 - Ac3H11_2684 0.14 -0.2 978,809 - Ac3H11_2684 0.14 -1.1 978,809 - Ac3H11_2684 0.14 +0.7 978,946 + Ac3H11_2684 0.23 -1.8 978,947 - Ac3H11_2684 0.23 -0.1 979,048 + Ac3H11_2684 0.29 -0.8 979,048 + Ac3H11_2684 0.29 -1.4 979,049 - Ac3H11_2684 0.29 +0.6 979,049 - Ac3H11_2684 0.29 +0.9 979,157 + Ac3H11_2684 0.37 +0.8 979,223 + Ac3H11_2684 0.41 -1.0 979,303 + Ac3H11_2684 0.46 +0.5 979,303 + Ac3H11_2684 0.46 +1.2 979,303 + Ac3H11_2684 0.46 +1.6 979,303 + Ac3H11_2684 0.46 -2.0 979,344 + Ac3H11_2684 0.49 +1.1 979,344 + Ac3H11_2684 0.49 +0.3 979,345 - Ac3H11_2684 0.49 -0.7 979,345 - Ac3H11_2684 0.49 +0.3 979,352 - Ac3H11_2684 0.49 +0.2 979,357 + Ac3H11_2684 0.50 +1.3 979,358 - Ac3H11_2684 0.50 +1.0 979,358 - +0.2 979,390 + Ac3H11_2684 0.52 -0.2 979,390 + Ac3H11_2684 0.52 -0.3 979,390 + Ac3H11_2684 0.52 +0.4 979,390 + Ac3H11_2684 0.52 -0.7 979,390 + Ac3H11_2684 0.52 -0.2 979,390 + Ac3H11_2684 0.52 -0.6 979,390 + Ac3H11_2684 0.52 -0.2 979,390 + Ac3H11_2684 0.52 -0.1 979,391 - Ac3H11_2684 0.52 +0.3 979,391 - Ac3H11_2684 0.52 -1.1 979,391 - Ac3H11_2684 0.52 +0.8 979,444 + Ac3H11_2684 0.55 +0.1 979,444 + Ac3H11_2684 0.55 +1.3 979,444 + Ac3H11_2684 0.55 +0.2 979,451 - Ac3H11_2684 0.56 +0.8 979,508 + Ac3H11_2684 0.59 +1.5 979,509 - Ac3H11_2684 0.59 +1.7
Or see this region's nucleotide sequence